Parental gene:

TSPAN6, ENSSSCG00000012481

Aliases:None
Description:Sus scrofa tetraspanin 6 (TSPAN6), mRNA. [Source:RefSeq mRNA;Acc:NM_001244061]
Organism:Pig (Sus scrofa)
Coordinates:X:90165030..90174389(-)


>ENSSSCG00000012481
ATGGCGTCCCCGTCTCGGAGGCTGCAGACCAAACCGGTGATCACTTGTTTCAAGAGCGTCCTCTTGATCTACACATTCAT
CTTCTGGATCACCGGTGTAATCCTTCTTGCCGTTGGCATTTGGGGCAAGGTGAGCCTAGAGAATTATTTTTCCCTTTTAA
ATGAGAAGGCCACCAATGTCCCCTTCGTGCTCATTGGCATCGGCACTGTCATCATTCTATTGGGCACCTTCGGTTGTTTT
GCTACCTGCCGAGCTTCTGCATGGATGCTAAAACTGTATGCAATGTTTCTGACTCTTATTTTTTTGGTCGAACTGGTCGC
TGCCATCGTAGGATTTGTTTTCAGACATGAGATTAAGAACAGCTTTAAGAATAATTATGAGAAAGCGTTAAAACAATATA
ATGCTACGGGAGATTATAGAAGCGATGCAGTAGACAAGATCCAAAATACATTGCATTGTTGTGGTGTCACCGACTATAGA
GATTGGAAGGATACTAATTATTATTCAGAGAAAGGATTTCCCAAGAGCTGCTGTAAACTTGAAGGTTGTTCTCCTCAGAG
AGATGCAGATAAAGTAAACAATGAAGGTTGTTTTATAAAAGTGATGACCATTATAGAGTCAGAAATGGGCGTTGTTGCGG
GAATTTCCTTTGGAGTTGCTTGCTTCCAGCTGATCGGAATCTTTCTAGCCTACTGCCTCTCTCGTGCCATAACAAATAAC
CAGTATGAGATAGTGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .98 RPM
SRP014902_testis 36 .92 RPM
SRP018288_heart 12 .63 RPM
SRP018288_kidney 43 .74 RPM
SRP018288_liver 89 .55 RPM
SRP018288_lung 43 .48 RPM
SRP018856_adipose 31 .94 RPM
SRP035408_brain 59 .33 RPM
SRP035408_liver 128 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017521 ortholog_one2many 3 retrogenes
retro_cfam_1600, retro_cfam_1609, retro_cfam_878,
Callithrix jacchus ENSCJAG00000004288 ortholog_one2many 1 retrogene
retro_cjac_2306,
Echinops telfairi ENSETEG00000012276 ortholog_many2many 1 retrogene
retro_etel_1987,
Loxodonta africana ENSLAFG00000027296 ortholog_one2many 1 retrogene
retro_lafr_994,
Microcebus murinus ENSMICG00000011370 ortholog_one2many 1 retrogene
retro_mmur_447,
Nomascus leucogenys ENSNLEG00000007505 ortholog_one2many 1 retrogene
retro_nleu_1186,
Otolemur garnettii ENSOGAG00000004869 ortholog_one2many 1 retrogene
retro_ogar_2827,
Sarcophilus harrisii ENSSHAG00000000274 ortholog_one2many 1 retrogene
retro_shar_515,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_84 99.59 100.00
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Download FASTA sequences of all ENSSSCG00000012481 retrocopies