Parental gene:

SYNCRIP, ENSSSCG00000004294

Aliases:None
Description:synaptotagmin binding, cytoplasmic RNA interacting protein [Source:HGNC Symbol;Acc:16918]
Organism:Pig (Sus scrofa)
Coordinates:1:61000032..61027408(-)


>ENSSSCG00000004294
ATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCA
TTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAG
GGCTGGTTGCACATAGCGATTTAGATGAAAGAGCTATCGAAGCTTTAAAAGAATTCAATGAAGACGGCGCATTGGCAGTT
CTTCAGCAGTTTAAAGACAGTGATCTCTCTCATGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTACAG
GCAGAGAGAAAAACAGGGGACCAAAGTAGCAGATTCTAGCAAAGGACCAGATGAAGCAAAAATTAAGGCACTCTTGGAAA
GAACAGGCTACACACTTGATGTGACCACTGGACAGAGGAAGTATGGGGGACCACCTCCAGATTCCGTTTATTCAGGTCAG
CAGCCTTCTGTTGGCACTGAGATATTTGTGGGGAAGATCCCAAGAGATCTGTTTGAGGATGAACTTGTTCCATTGTTTGA
AAAAGCTGGACCTATATGGGATCTTCGTCTAATGATGGATCCACTAACAGGTCTCAATAGAGGTTATGCGTTTGTCACTT
TTTGTACAAAAGAAGCCGCCCAGGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACATATTGGTGTC
TGCATCTCGGTTGCCAACAACAGGCTTTTTGTGGGCTCTATTCCTAAGAGTAAAACCAAGGAACAGATTCTTGAAGAATT
TAGCAAAGTAACAGAGGGTCTTACAGACGTCATTTTATACCACCAACCAGATGATAAGAAAAAAAACAGAGGTTTTTGCT
TCCTTGAATATGAAGATCACAAAACAGCTGCCCAGGCAAGGCGTAGGTTAATGAGTGGTAAAGTCAAGGTCTGGGGGAAT
GTTGGAACTGTTGAATGGGCTGATCCTATAGAAGACCCCGATCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTGCG
CAACCTTGCCAATACTGTAACAGAAGAAATTTTAGAAAAAGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAAT
TAAAAGATTATGCTTTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTG
GAAGGAGAAAATATTGAAATTGTTTTTGCTAAGCCACCAGATCAGAAAAGGAAAGAAAGAAAAGCTCAGAGGCAAGCTGC
AAAGAATCAAATGTATGATGATTACTACTATTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAG
GTAGAGGTGGTTATGGATATCCTCCAGATTATTACGGATATGAAGATTACTATGATTATTATGGCTATGATTACCATAAC
TATCGTGGTGGCTATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGC
AAGGGGTGCTGCTCCATCCAGAGGTCGCGGGGCTGCTCCTCCCCGTGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTG
GATCAGCAAGAGGCGTTCGCGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGGTACGTGGTGCGAGGGGTGGC
CGCGGTGGAAATGTAGGAGGAAAGCGCAAAGCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAGTAATCA
GAACTGGGGCTCCCAACCCATTGCTCAGCAACCGCTCCAAGGTGGTGATCATTCTGGTAACTATGGTTACAAATCTGAAA
ACCAGGAGTTTTATCAGGATACTTTTGGGCAACAGTGGAAGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 15 .93 RPM
SRP014902_testis 35 .36 RPM
SRP018288_heart 48 .80 RPM
SRP018288_kidney 65 .41 RPM
SRP018288_liver 53 .25 RPM
SRP018288_lung 121 .27 RPM
SRP018856_adipose 60 .61 RPM
SRP035408_brain 68 .92 RPM
SRP035408_liver 85 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000018345 ortholog_one2one 1 retrogene
retro_dnov_1927,
Homo sapiens ENSG00000135316 ortholog_one2one 1 retrogene
retro_hsap_2410,
Macaca mulatta ENSMMUG00000012575 ortholog_one2one 1 retrogene
retro_mmul_1843,
Nomascus leucogenys ENSNLEG00000012879 ortholog_one2one 1 retrogene
retro_nleu_162,
Oryctolagus cuniculus ENSOCUG00000000601 ortholog_one2one 1 retrogene
retro_ocun_1683,
Pongo abelii ENSPPYG00000016819 ortholog_one2one 1 retrogene
retro_pabe_1775,
Pan troglodytes ENSPTRG00000018393 ortholog_one2one 1 retrogene
retro_ptro_1387,
Rattus norvegicus ENSRNOG00000000204 ortholog_one2one 1 retrogene
retro_rnor_805,
Vicugna pacos ENSVPAG00000001061 ortholog_one2one 1 retrogene
retro_vpac_391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_436 79.25 66.51
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Download FASTA sequences of all ENSSSCG00000004294 retrocopies