Parental gene:

SYNCRIP, ENSDNOG00000018345

Aliases:None
Description:synaptotagmin binding, cytoplasmic RNA interacting protein [Source:HGNC Symbol;Acc:16918]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3159:6179..24654(-)


>ENSDNOG00000018345
ATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTT
TCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTAGTTGCAC
ATAGTGATTTAGATGAAAGAGCTATCGAAGCTTTAAAAGAATTCAATGAAGACGGTGCTTTGGCAGTTCTTCAACAGTTT
AAAGACAGTGATCTCTCTCATGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTACAGGCAGAGAGAAAA
ACAGGGGACCAAAGTAGCAGATTCTAGCAAAGGACCAGATGAGGCAAAAATTAAGGCACTCTTGGAAAGAACAGGCTACA
CGCTTGATGTGACCACTGGACAGAGGAAGTATGGGGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTT
GGCACTGAGATATTTGTAGGCAAGATCCCAAGAGATCTGTTTGAGGATGAACTTGTTCCTTTATTTGAGAAAGCTGGGCC
TATATGGGATCTTCGTCTAATGATGGATCCACTCACCGGTCTAAACAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAG
AAGCAGCTCAGGAGGCTGTTAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAGGGTCTTACAGATGTCATTTTATACCACCAACCGGATGATAAGAAAAAAAACAGAGGCTTTTGTTTCCTTTATGAAG
ATCACAAAACAGCTGCGCAGGCACGGCGTAGGTTAATGAGTGGTAAAGTCAAAGTCTGGGGAAATGTTGGAACTGTTGAA
TGGGCTGACCCTATAGAAGATCCTGATCCTGAAGTTATGGCAAAGGTGAAAGTGCTGTTTGTACGTAACCTTGCCAATAC
TGTAACAGAAGAAATTTTAGAAAAAGCGTTTAGTCATTTTGGGAAACTGGAGCGAGTGAAGAAACTAAAAGATTATGCTT
TCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAATGAATGGTAAAGACTTGGAAGGAAATATTGAAATT
GTTTCGAAACTACCAGATCAGATAAGAAGAAAAGCTCAGAGGCAAGCAGCAAAGAATCAAATGTATGATGATTACTACTA
TTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAGGTAGAGGTGGTTATGGATATGCTCCAGATT
ATTATGGATATGAAGATTATTATGATTATTATGGCTATGATTACCATAACTATCGTGGTGGATATGAAGATCCATACTAT
GGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGCTCCATCCAGAGGTCGTGG
GGCTGCTCCTCCCCGCGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTGGATCAGCAAGAGGCGTTCGTGGTGCGAGAG
GAGGTGCCCAACAACAAAGAGGCCGCGGGGTACGTGGTGCGAGGGGTGGCCGCGGTGGAAATGTAGGAGGAAAGCGCAAA
GCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAATAATCAGAACTGGGGCTCCCAACCCATTGCTCAGCA
ACCGCTCCAAGGTGGTGATCATTCTGGTAACTATGGTTACAAATCTGAAAACCAGGAGTTTTATCAGGATACTTTTGGGC
AACAGTGGAAGTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 67 .09 RPM
SRP012922_cerebellum 22 .68 RPM
SRP012922_heart 14 .62 RPM
SRP012922_kidney 23 .00 RPM
SRP012922_liver 21 .21 RPM
SRP012922_lung 36 .96 RPM
SRP012922_quadricep_muscle 20 .08 RPM
SRP012922_spleen 45 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000135316 ortholog_one2one 1 retrogene
retro_hsap_2410,
Macaca mulatta ENSMMUG00000012575 ortholog_one2one 1 retrogene
retro_mmul_1843,
Nomascus leucogenys ENSNLEG00000012879 ortholog_one2one 1 retrogene
retro_nleu_162,
Oryctolagus cuniculus ENSOCUG00000000601 ortholog_one2one 1 retrogene
retro_ocun_1683,
Pongo abelii ENSPPYG00000016819 ortholog_one2one 1 retrogene
retro_pabe_1775,
Pan troglodytes ENSPTRG00000018393 ortholog_one2one 1 retrogene
retro_ptro_1387,
Rattus norvegicus ENSRNOG00000000204 ortholog_one2one 1 retrogene
retro_rnor_805,
Sus scrofa ENSSSCG00000004294 ortholog_one2one 1 retrogene
retro_sscr_436,
Vicugna pacos ENSVPAG00000001061 ortholog_one2one 1 retrogene
retro_vpac_391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1927 78.51 56.56
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Download FASTA sequences of all ENSDNOG00000018345 retrocopies