Parental gene:

Matr3, ENSRNOG00000019875

Aliases:Matr3, P130/MAT3
Description:Matrin-3 [Source:UniProtKB/Swiss-Prot;Acc:P43244]
Organism:Rat (Rattus norvegicus)
Coordinates:18:28074391..28103826(+)


>ENSRNOG00000019875
ATGTCCAAGTCATTCCAGCAGTCATCTCTCGGTAGGGATTCACAGGGTCATGGGCGTGACCTGTCTGCAGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTA
GCTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCC
CATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTGTCTTCTCAACACCGTGGAGATACAGACCA
GGCCAGTAATATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAACTTGCCCCAAATTCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGA
GATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCATTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATT
ATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGA
GAAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCT
CTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAG
CTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACTGGACACACAATGGGTGATCCATTCATGCTGCAGCA
GTCAACAAACCCAGCACCGGGAATTCTGGGACCGCCACCTCCTTCATTTCATCTTGGAGGACCAGCAGTTGGACCAAGAG
GAAATCTGGGTGCTGGTAATGGGAACCTACAGGGACCAAGACACATGCAAAAAGGCAGAGTGGAAACCAGCCGAGTTGTT
CACATTATGGATTTTCAGCGAGGAAAAAACTTGAGATACCAGCTATTACAACTGGTAGAACCATTTGGAGTCATTTCAAA
TCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCGACCACAGAAGATGCTCAGGCTGCTGTGGATTATT
ATACAACTACACCAGCATTAGTGTTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAGAGAATAAAGAAACCT
GAAGGAAAACCAGATCAGAAGTTTGATCAAAAGCAAGAACTTGGACGTGTGATACATCTCAGCAATTTACCTCATTCTGG
CTATTCTGACAGTGCTGTCCTCAAGCTTGCAGAGCCTTATGGGAAAATAAAAAATTATATATTGATGAGGATGAAAAGTC
AGGCTTTTATTGAGATGGAAACCAGAGAAGATGCAATGGCAATGGTTGACCACTGTCTAAAGAAGGCACTTTGGTTTCAG
GGAAGATGTGTTAAAGTTGACTTGTCTGAGAAATATAAAAAACTGGTGCTGAGGATTCCTAACAGAGGCATTGACTTACT
GAAAAAAGATAAATCTCGGAAAAGATCCTATTCTCCAGATGGAAAAGAATCTCCAAGTGATAAGAAGTCCAAAACTGATG
GTGCTCAGAAGACTGAGAATCCAGCTGAGGGTAAAGAACAAGAAGAGAAGTCGGGTGAGGATGGTGAGAAAGACACCAAG
GATGACCAGACAGAACAGGAGCCCAGTATGCTTCTTGAATCTGAAGATGAATTGCTTGTCGATGAGGAAGAAGCTGCAGC
ACTACTAGAAAGTGGAAGCTCAGTGGGTGATGAGACTGATCTTGCTAATTTAGGGGATGTATCTTCTGATGGGAAAAAGG
AGCCTTCAGATAAAGCTGTGAAAAAAGATGCAAGTGCAACATCCAAGAAAAAACTTAAAAAGGTGGACAAGATTGAGGAA
CTTGATCAAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAGAACCAGGTGCTGAATCTGCTGA
GAATGCTGATGATCCAAACAAAGACGCAAGTGATAATTCAGATGGCCAAAATGATGAGAACAAGGAGGACTATACAATTC
CAGATGAGTATAGAATTGGACCATATCAGCCTAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTAC
TGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAA
ATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAA

Library Parental gene expression (RPM)
SRP017611_brain 99 .65 RPM
SRP017611_kidney 43 .26 RPM
SRP017611_liver 14 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006888 ortholog_one2one 1 retrogene
retro_cjac_3950,
Homo sapiens ENSG00000015479 ortholog_one2one 1 retrogene
retro_hsap_199,
Gorilla gorilla ENSGGOG00000007308 ortholog_one2one 2 retrogenes
retro_ggor_276, retro_ggor_421,
Nomascus leucogenys ENSNLEG00000009093 ortholog_one2one 1 retrogene
retro_nleu_1849,
Oryctolagus cuniculus ENSOCUG00000026311 ortholog_one2one 1 retrogene
retro_ocun_652,
Otolemur garnettii ENSOGAG00000010607 ortholog_one2one 1 retrogene
retro_ogar_3417,
Pongo abelii ENSPPYG00000015835 ortholog_one2one 2 retrogenes
retro_pabe_1722, retro_pabe_438,
Pan troglodytes ENSPTRG00000017294 ortholog_one2one 1 retrogene
retro_ptro_181,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_475 99.06 100.00
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2. retro_rnor_1124 99.43 62.37
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Download FASTA sequences of all ENSRNOG00000019875 retrocopies