Parental gene:

Sdccag3, ENSRNOG00000018876

Aliases:None
Description:serologically defined colon cancer antigen 3 [Source:RefSeq peptide;Acc:NP_001013153]
Organism:Rat (Rattus norvegicus)
Coordinates:3:9188725..9195447(-)


>ENSRNOG00000018876
ATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCACTATCGCGGACGCGGAGCCTCGTAGTTCCCGACGCTCCTGCGTT
CTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAACGCCCCCATGGCGGGGACCTGCACCCCCAGTTCTTCGGCT
TTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTAGGAGACACAGATTTTGGCTATGGAAAGGGG
AAATGTACTAAACAAGGCCCGTCGGGAGCCCATGAGACGCGCTTTGGAGGTGACAAACTTGAAGACCTTGAAGAAGCCAA
TCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCTCAGCCTGTCAAAAGAAGACACAGCCACCAGTCGAATTTACC
CGAAGGAGGCCTCGAGGCACCCACTGGGACTAGACCACAACTCCCCTGTCTCCCAGCCCATGGGATATGGCCTGGAATAT
CAGCAGCCATTTTTTGAAGACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGAGGACGGGTGGAGCAGAGCCTACCT
GCCGTCTGCCGTGGAGCAGACTCACTCCACGAGAGCCACGCAGAACTCATCGCCCTGTGGCACCTACCTTTCCTTCTTTT
CCAACGCGTCAGAGCTGGCAGGTCCTGAGTCTTTGCCCCCATGGACACTGAGTGACACTGACTCCAGGCTCTCCCCAGCG
TCTCCAGCTGGGAATCCTAATGTAGACTTTGCAGCTCATGAAGAATCCTTAGGGGACAGACACCTGCGGACGCTGCAGTT
AAGTTACGAAGCACTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAGTGAGGTTCAGAGCTTCTCTGAAACTCAAA
CAGAAATGGTGAGGACGCTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAAGAGAGTGACTTCCATGACCTGGAGTCA
GTAGTCCAGCAAGTCGAACAGAACCTCGAACTGATGACCAAACGGGCTGTAAAAGCAGAAAATCATGTCATGAAGCTGAA
ACAGGAAGTAAATTTGCTCCAGGCACAGCTCTCCAACTTCAAGCGAGAAAACGAAGCCCTTCGGTCAGGCCAGGGTGCCA
GCCTTACCGTGGTGAAGCAGAACACCGATGTGGCCTTGCAGAACCTCCATGTTGTCATGAACAGTGCACACGCATCTATA
AAGCAGCTGGTGTCTGGAGCAGAGACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATCGACAGAATTACTGAAGTTAA
GGATGAGGCAGACTCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 42 .49 RPM
SRP017611_kidney 36 .15 RPM
SRP017611_liver 22 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000165689 ortholog_one2many 1 retrogene
retro_hsap_1944,
Gorilla gorilla ENSGGOG00000010905 ortholog_many2many 1 retrogene
retro_ggor_1414,
Mus musculus ENSMUSG00000026927 ortholog_one2many 3 retrogenes
retro_mmus_1545, retro_mmus_3492, retro_mmus_711,
Nomascus leucogenys ENSNLEG00000008186 ortholog_one2many 1 retrogene
retro_nleu_891,
Otolemur garnettii ENSOGAG00000015872 ortholog_many2many 1 retrogene
retro_ogar_3418,
Pongo abelii ENSPPYG00000019772 ortholog_one2many 2 retrogenes
retro_pabe_1612, retro_pabe_256,
Pan troglodytes ENSPTRG00000021555 ortholog_one2many 1 retrogene
retro_ptro_1300,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1215 100.00 77.78
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2. retro_rnor_2770 99.44 83.10
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Download FASTA sequences of all ENSRNOG00000018876 retrocopies