Parental gene:

Vta1, ENSRNOG00000011540

Aliases:Vta1, Lip5, RGD1305031
Description:vacuolar protein sorting-associated protein VTA1 homolog [Source:RefSeq peptide;Acc:NP_001020811]
Organism:Rat (Rattus norvegicus)
Coordinates:1:10447775..10495500(-)


>ENSRNOG00000011540
ATGACAAGCGAGATCCTGTGGTGGCCTACTACTCTTAAGAAACAGTTGGGGGATAATGAAGCTGTTACTCAAGAAATCGT
TGGTTGTGCCCATTTGGAAAATTATGCTTTGAAAATGTTCCTGTACGCGGACAACGAAGACCGAGCTGGACGATTTCACA
AAAACATGATCAAGTCCTTCTACACTGCCAGCCTTTTAATAGATGTCATCACAGTGTTTGGCGAGCTCACAGATGAAAAT
GTGAAACATAGAAAGTACGCAAGGTGGAAGGCAACATATATTCATAACTGCTTAAAGAATGGGGAGACTCCTCAAGCAGG
CCCTGTTGGAATAGAGGAAGATAACGATGTTGAGGAAAATGAAGATGTTGGTGCAACCTCTCTGCCCACTCAGCCACCTC
AGCCATCATCATCCTCAACGTACGACCCAAGCAACTTGGCAGCAGGCAGCTACAGTGGGATACAGATCCCTCCGGGTGCA
CATGCTCCAGCCAATACCCCTGCAGAAGTGCCGCACAGCACAGGTGTAACAAGTAATGCTGTCCAGCCTAGTCCACAGAC
TGTCCCAGCCATTCCCGCCATTGATCCTGACCTGTACACAGCTTCCCAGGGGGATGTCCGCCTGACCCCAGAGGACTTTG
CTCGGGCTCAGAAGTACTGCAAGTACGCTGGCAGTGCCCTGCAGTATGAAGACGTGAGCACCGCGGTGCAGAACCTGCAG
AAGGCCCTCAGGCTGCTGACAACGGGCAGGGAATGA

Library Parental gene expression (RPM)
SRP017611_brain 36 .31 RPM
SRP017611_kidney 32 .73 RPM
SRP017611_liver 11 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000009844 ortholog_one2one 1 retrogene
retro_hsap_4088,
Gorilla gorilla ENSGGOG00000015524 ortholog_one2one 1 retrogene
retro_ggor_2742,
Microcebus murinus ENSMICG00000004420 ortholog_one2one 2 retrogenes
retro_mmur_1290, retro_mmur_290,
Macaca mulatta ENSMMUG00000023012 ortholog_one2one 1 retrogene
retro_mmul_751,
Nomascus leucogenys ENSNLEG00000015053 ortholog_one2one 1 retrogene
retro_nleu_1911,
Oryctolagus cuniculus ENSOCUG00000002554 ortholog_one2one 10 retrogenes
retro_ocun_1543, retro_ocun_1689, retro_ocun_1790, retro_ocun_1810, retro_ocun_1821, retro_ocun_1832, retro_ocun_1848, retro_ocun_1853, retro_ocun_1864, retro_ocun_965,
Pan troglodytes ENSPTRG00000018662 ortholog_one2one 1 retrogene
retro_ptro_2773,
Tursiops truncatus ENSTTRG00000014998 ortholog_one2one 1 retrogene
retro_ttru_1825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_799 87.97 96.02
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Download FASTA sequences of all ENSRNOG00000011540 retrocopies