Parental gene:

VTA1, ENSG00000009844

Aliases:None
Description:Vps20-associated 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20954]
Organism:Human (Homo sapiens)
Coordinates:6:142468366..142545826(+)


>ENSG00000009844
ATGGCCGCGCTTGCACCGCTGCCCCCGCTCCCCGCACAGTTCAAGAGCATACAGCATCATCTGAGGACGGCTCAGGAGCA
TGACAAGCGAGACCCTGTGGTGGCTTATTACTGTCGTTTATACGCAATGCAGACTGGAATGAAGATCGATAGTAAAACTC
CTGAATGTCGCAAATTTTTATCAAAGTTAATGGATCAGTTAGAAGCTCTAAAGAAGCAGTTGGGTGATAATGAAGCTATT
ACTCAAGAAATAGTGGGCTGTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTGTATGCAGACAATGAAGATCGTGC
TGGACGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTGATAGATGTCATAACAGTATTTGGAGAAC
TCACTGATGAAAATGTGAAACACAGGAAGTATGCCAGATGGAAGGCAACATACATCCATAATTGTTTAAAGAATGGGGAG
ACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATATTGAAGAAAATGAAGATGCTGGAGCAGCCTCTCTGCC
CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACCCAAGCAACATGCCATCAGGCAACTATACTGGAATACAGA
TTCCTCCGGGTGCACACGCTCCAGCTAATACACCAGCAGAAGTGCCTCACAGCACAGGTGTAGCAAGTAATACTATCCAA
CCTACTCCACAGACTATACCTGCCATTGATCCCGCACTTTTCAATACAATTTCCCAGGGGGATGTTCGTCTAACCCCAGA
AGACTTTGCTAGAGCTCAGAAGTACTGCAAATATGCTGGCAGTGCTTTGCAGTATGAAGATGTAAGCACTGCTGTCCAGA
ATCTACAAAAGGCTCTCAAGTTACTGACGACAGGCAGAGAATGA

Library Parental gene expression (RPM)
bodymap2_adipose 28 .35 RPM
bodymap2_adrenal 32 .91 RPM
bodymap2_brain 65 .56 RPM
bodymap2_breast 38 .76 RPM
bodymap2_colon 39 .29 RPM
bodymap2_heart 32 .82 RPM
bodymap2_kidney 51 .89 RPM
bodymap2_liver 31 .22 RPM
bodymap2_lung 25 .83 RPM
bodymap2_lymph_node 37 .24 RPM
bodymap2_ovary 40 .69 RPM
bodymap2_prostate 50 .21 RPM
bodymap2_skeletal_muscle 56 .91 RPM
bodymap2_testis 41 .31 RPM
bodymap2_thyroid 58 .66 RPM
bodymap2_white_blood_cells 71 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000015524 ortholog_one2one 1 retrogene
retro_ggor_2742,
Microcebus murinus ENSMICG00000004420 ortholog_one2one 2 retrogenes
retro_mmur_1290, retro_mmur_290,
Macaca mulatta ENSMMUG00000023012 ortholog_one2one 1 retrogene
retro_mmul_751,
Nomascus leucogenys ENSNLEG00000015053 ortholog_one2one 1 retrogene
retro_nleu_1911,
Oryctolagus cuniculus ENSOCUG00000002554 ortholog_one2one 10 retrogenes
retro_ocun_1543, retro_ocun_1689, retro_ocun_1790, retro_ocun_1810, retro_ocun_1821, retro_ocun_1832, retro_ocun_1848, retro_ocun_1853, retro_ocun_1864, retro_ocun_965,
Pan troglodytes ENSPTRG00000018662 ortholog_one2one 1 retrogene
retro_ptro_2773,
Rattus norvegicus ENSRNOG00000011540 ortholog_one2one 1 retrogene
retro_rnor_799,
Tursiops truncatus ENSTTRG00000014998 ortholog_one2one 1 retrogene
retro_ttru_1825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4088 63.49 76.87
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Download FASTA sequences of all ENSG00000009844 retrocopies