Parental gene:

Cbll1, ENSRNOG00000007253

Aliases:None
Description:E3 ubiquitin-protein ligase Hakai [Source:RefSeq peptide;Acc:NP_001101488]
Organism:Rat (Rattus norvegicus)
Coordinates:6:59443727..59457590(-)


>ENSRNOG00000007253
ATGGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCCTTGGGTGGTCTCGATGTCCGCAGAAGAATTCC
TATAAAACTCATCTCCAAACAGGCCAACAAGGTTAAGCCTGCCCCTCGGACTCAAAGGACTGTTAGCAGGATGCCTGCAA
AGGCCGCACAAGAAGGATTTGATTATAATGAAGAACAGCGGTATGACTGTAAAGGGGGCGAACTCTTTGGAAATCAGCGA
AGATTTCCGGGACACCTGTTTTGGGATTTTAAGATAAACATCTTAGGTGAAAAGGATGATACACCAGTTCATTTCTGTGA
CAAATGTGGATTGCCCATTAAAGTCTATGGAAGAATGATTCCATGCAAGCATGTCTTTTGCTATGACTGTGCTATTTTAC
ATGAAAAAAAAGGAGATAAGATGTGCCCGGGATGTAGTGATCCTGTGCAGCGGATTGAACAGTGCACACGAGGTTCTCTC
TTCATGTGTAGCATTGTTCAAGGTTGCAAGAGAACATATCTGTCTCAAAGGGACTTACAAGCTCACATCAACCATCGCCA
TATGAGAGCTGGAAAACCTGTTACCCGTGCTTCACTTGAGAATGTTCATCCTCCTATTGCCCCCCCACCAACTGAAATCC
CTGATCGTTTCATAATGCCACCAGACAAGCATCATATGAGCCACATTCCTCCAAAGCAGCACATCATGATGCCACCGCCT
CCTTTGCAGCATGTGCCACATGAGCACTATAATCAGCCACACGAGGATATCCGTGCTCCTCCAGCAGAGTTGTCCATGGC
TCCACCTCCACCTCGTTCAGTCAGTCAGGAAACCTTTCGTATTTCAACAAGAAAACACAGCAATTTAATAACCGTCCCTA
TTCAGGATGACTCAAGTTCAGGTGCTAGAGAACCACCACCTCCTGCCCCAGCACCTGCTCATCACCATCCTGAATATCAG
GGTCAACCAGTGGTGTCTCACCCTCATCACATCATGCCTCCACAGCAACATTACGCACCTCCCCCACCTCCTCCACCACC
AATAAGCCATCCAATGCCACATCCTCCCCAGGCTGCAGGTACTCCTCACTTGGTCTATAGCCAAGCTCCACCTCCACCAA
TGACCTCTGCTCCACCACCAATAACCCCTCCCCCTGGACATATTATTGCCCAAATGCCACCTTATATGAATCATCCTCCT
CCAGGACCCCCTCCACCTCAGCATGGTGGTCCACCTGTAACTGCACCCCCTCCGCACCATTATAATCCTAACTCTTTACC
CCAGTTTACTGAAGATCAAGGAACTCTGAGCCCTCCATTTACACAACCAGGAGGAATGAGTCCTGGTATCTGGCCTGCAC
CAAGAGGGCCACCACCTCCTCCACGAATGCAGGGCCCACCTTCTCAAACCCCACTACCTGGACCACATCATCCAGATCAA
ACAAGATACAGACCGTATTACCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 29 .19 RPM
SRP017611_kidney 19 .82 RPM
SRP017611_liver 13 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016379 ortholog_one2one 1 retrogene
retro_cjac_4046,
Homo sapiens ENSG00000105879 ortholog_one2one 1 retrogene
retro_hsap_49,
Gorilla gorilla ENSGGOG00000004921 ortholog_one2one 1 retrogene
retro_ggor_164,
Microcebus murinus ENSMICG00000012936 ortholog_one2one 1 retrogene
retro_mmur_1635,
Nomascus leucogenys ENSNLEG00000008660 ortholog_one2one 1 retrogene
retro_nleu_19,
Pongo abelii ENSPPYG00000017904 ortholog_one2one 1 retrogene
retro_pabe_112,
Pan troglodytes ENSPTRG00000019583 ortholog_one2one 1 retrogene
retro_ptro_67,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1063 66.80 52.66
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Download FASTA sequences of all ENSRNOG00000007253 retrocopies