Parental gene:

HNRNPD, ENSPTRG00000016215

Aliases:HNRNPD, HNRPD
Description:Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) [Source:UniProtKB/TrEMBL;Acc:K7D7U2]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:47641192..47661409(+)


>ENSPTRG00000016215
ATGTCGGAGGAGCAGTTCGGCGGGGACGGGGCGGCGGCAGCGGCAACGGCGGCGGTAGGCGGCTCGGCGGGCGAGCAGGA
GGGAGCCATGGTGGCGGCGACACAGGGGGCAGCGGCGGCGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGTCTG
GAGGCACCGAAGGGGGCAGCGCCGAGTCGGAGGGGGCGAAGATTGACGCCAGTAAGAACGAGGAGGATGAAGGCCATTCA
AACTCCTCCCCACGACACTCTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAATGTTTATAGGAGGCCTTAGCTGGGA
CACTACAAAGAAAGATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATCCTATCA
CAGGGCGATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAATCGGAGAGTGTAGATAAGGTCATGGATCAAAAAGAACAT
AAATTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACAAAAGAGCCGGTTAAAAAAATTTTTGTTGG
TGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGGTTTTGGTGAGGTGGAATCCATAGAGCTCC
CCATGGACAACAAGACCAATAAGAGGCGTGGATTCTGCTTTATTACCTTTAAGGAAGAAGAACCAGTGAAGAAGATAATG
GAAAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCCATGTCGAAGGAACAATATCAGCAACAGCA
ACAGTGGGGATCTAGAGGAGGATTTGCAGGAAGAGCTCGTGGAAGAGGTGGTGGCCCCAGTCAAAACTGGAACCAGGGAT
ATAGTAACTATTGGAATCAAGGCTATGGCAACTATGGATATAACAGCCAAGGTTACGGTGGTTATGGAGGATATGACTAC
ACTGGTTACAACAACTACTATGGATATGGTGATTATAGCAACCAGCAGAGTGGTTATGGGAAGGTATCCAGGCGAGGTGG
TCATCAAAATAGCTACAAACCATACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 73 .57 RPM
SRP007412_cerebellum 152 .28 RPM
SRP007412_heart 79 .77 RPM
SRP007412_kidney 104 .29 RPM
SRP007412_liver 111 .03 RPM
SRP007412_testis 129 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015165 ortholog_one2many 1 retrogene
retro_cjac_2796,
Dipodomys ordii ENSDORG00000012507 ortholog_one2one 1 retrogene
retro_dord_649,
Homo sapiens ENSG00000138668 ortholog_one2one 1 retrogene
retro_hsap_4689,
Gorilla gorilla ENSGGOG00000026760 ortholog_one2one 1 retrogene
retro_ggor_2916,
Loxodonta africana ENSLAFG00000016483 ortholog_one2one 1 retrogene
retro_lafr_686,
Pan troglodytes ENSPTRG00000012676 other_paralog 5 retrogenes
retro_ptro_1059, retro_ptro_2430, retro_ptro_2966, retro_ptro_683, retro_ptro_872,
Pan troglodytes ENSPTRG00000017601 within_species_paralog 1 retrogene
retro_ptro_666,
Sarcophilus harrisii ENSSHAG00000013312 ortholog_one2one 1 retrogene
retro_shar_752,
Tarsius syrichta ENSTSYG00000010395 ortholog_one2one 3 retrogenes
retro_tsyr_1092, retro_tsyr_2070, retro_tsyr_269,
Tursiops truncatus ENSTTRG00000007592 ortholog_one2one 1 retrogene
retro_ttru_1913,
Vicugna pacos ENSVPAG00000004374 ortholog_one2one 2 retrogenes
retro_vpac_484, retro_vpac_97,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3116 85.02 58.31
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Download FASTA sequences of all ENSPTRG00000016215 retrocopies