Parental gene:

RPL17, ENSPTRG00000010012

Aliases:None
Description:ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:18:45412496..45416556(-)


>ENSPTRG00000010012
ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTCAA
GAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTAC
AGAAACAGTGTGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAA
GGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGGGTTT
AGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACTTACAGAGCTCATG
GTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCA
GAAGAGGAGGTTGCCCAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 167 .43 RPM
SRP007412_cerebellum 232 .84 RPM
SRP007412_heart 106 .24 RPM
SRP007412_kidney 275 .85 RPM
SRP007412_liver 136 .70 RPM
SRP007412_testis 130 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
retro_amel_1147, retro_amel_1150, retro_amel_1252, retro_amel_1273, retro_amel_132, retro_amel_1422, retro_amel_1435, retro_amel_1487, retro_amel_1541, retro_amel_156, retro_amel_1567, retro_amel_1582, retro_amel_1599, retro_amel_1622, retro_amel_1624, retro_amel_1652, retro_amel_1703, retro_amel_1704, retro_amel_1743, retro_amel_1757, retro_amel_184, retro_amel_1908, retro_amel_1922, retro_amel_208, retro_amel_359, retro_amel_401, retro_amel_425, retro_amel_426, retro_amel_452, retro_amel_486, retro_amel_589, retro_amel_731, retro_amel_736, retro_amel_780, retro_amel_820, retro_amel_834, retro_amel_865, retro_amel_950, retro_amel_953, retro_amel_980,
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
retro_cfam_102, retro_cfam_171, retro_cfam_175, retro_cfam_189, retro_cfam_2, retro_cfam_239, retro_cfam_34,
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
retro_hsap_2367,
Latimeria chalumnae ENSLACG00000008835 ortholog_one2one 1 retrogene
retro_lcha_38,
Loxodonta africana ENSLAFG00000005569 ortholog_one2one 16 retrogenes
retro_lafr_1001, retro_lafr_1036, retro_lafr_1060, retro_lafr_1130, retro_lafr_177, retro_lafr_186, retro_lafr_207, retro_lafr_213, retro_lafr_256, retro_lafr_293, retro_lafr_354, retro_lafr_721, retro_lafr_731, retro_lafr_773, retro_lafr_860, retro_lafr_933,
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
retro_mmul_1015, retro_mmul_1046, retro_mmul_1205, retro_mmul_1216, retro_mmul_1225, retro_mmul_1441, retro_mmul_163, retro_mmul_172, retro_mmul_1784, retro_mmul_1858, retro_mmul_1952, retro_mmul_2006, retro_mmul_2008, retro_mmul_2257, retro_mmul_2268, retro_mmul_2284, retro_mmul_2304, retro_mmul_2512, retro_mmul_46, retro_mmul_474, retro_mmul_589, retro_mmul_652, retro_mmul_669, retro_mmul_825, retro_mmul_956, retro_mmul_971,
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
retro_mputfur_1008, retro_mputfur_126, retro_mputfur_1349, retro_mputfur_16, retro_mputfur_184, retro_mputfur_40, retro_mputfur_536,
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene
retro_vpac_10,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_161 98.37 100.00
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2. retro_ptro_183 98.37 100.00
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3. retro_ptro_242 80.39 82.07
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4. retro_ptro_280 90.27 100.00
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5. retro_ptro_490 57.14 51.63
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6. retro_ptro_509 92.97 100.00
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7. retro_ptro_523 96.22 100.00
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8. retro_ptro_719 79.66 63.04
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9. retro_ptro_793 67.24 61.96
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10. retro_ptro_948 75.32 83.15
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11. retro_ptro_973 77.27 82.61
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12. retro_ptro_985 74.38 86.41
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13. retro_ptro_1069 98.37 100.00
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14. retro_ptro_1130 75.93 58.15
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15. retro_ptro_1193 82.78 82.07
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16. retro_ptro_1215 69.66 94.02
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17. retro_ptro_1227 90.09 60.33
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18. retro_ptro_1267 70.97 66.30
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19. retro_ptro_1271 83.24 100.00
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20. retro_ptro_1294 71.90 64.13
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21. retro_ptro_1308 87.00 54.35
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22. retro_ptro_1350 57.24 80.98
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23. retro_ptro_1443 68.97 63.04
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24. retro_ptro_1509 67.20 66.85
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25. retro_ptro_1634 81.25 69.02
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26. retro_ptro_1651 75.00 59.78
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27. retro_ptro_1653 65.69 54.35
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28. retro_ptro_1682 69.41 92.39
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29. retro_ptro_1733 66.42 71.74
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30. retro_ptro_1790 72.59 72.28
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31. retro_ptro_1887 91.76 98.91
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32. retro_ptro_1963 93.48 100.00
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33. retro_ptro_2059 83.70 100.00
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34. retro_ptro_2267 86.49 100.00
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35. retro_ptro_2270 66.44 77.17
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36. retro_ptro_2355 88.04 100.00
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37. retro_ptro_2392 74.49 53.26
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38. retro_ptro_2404 71.60 90.22
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39. retro_ptro_2450 83.70 73.37
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40. retro_ptro_2486 100.00 100.00
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41. retro_ptro_2498 59.46 95.65
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42. retro_ptro_2515 100.00 100.00
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43. retro_ptro_2576 86.96 100.00
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44. retro_ptro_2659 68.28 99.46
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45. retro_ptro_2675 90.27 100.00
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46. retro_ptro_2680 61.43 74.46
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47. retro_ptro_2693 75.74 72.83
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48. retro_ptro_2706 84.17 75.54
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49. retro_ptro_2787 63.37 53.80
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50. retro_ptro_2997 76.53 53.26
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51. retro_ptro_3073 100.00 100.00
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Download FASTA sequences of all ENSPTRG00000010012 retrocopies