Parental gene:

RPL19, ENSPTRG00000009086

Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:18178818..18183794(-)


>ENSPTRG00000009086
ATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGTAAGAAGAAGGTCTGGTTAGACCCCAA
TGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGC
CTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAG
CGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAG
AAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAA
ACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAG
GCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGAC
TTTATCCAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 226 .38 RPM
SRP007412_cerebellum 254 .63 RPM
SRP007412_heart 225 .62 RPM
SRP007412_kidney 560 .51 RPM
SRP007412_liver 455 .07 RPM
SRP007412_testis 166 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008520 possible_ortholog 4 retrogenes
retro_cjac_131, retro_cjac_220, retro_cjac_32, retro_cjac_64,
Dasypus novemcinctus ENSDNOG00000019742 possible_ortholog 7 retrogenes
retro_dnov_1478, retro_dnov_1897, retro_dnov_2, retro_dnov_2170, retro_dnov_2431, retro_dnov_691, retro_dnov_720,
Equus caballus ENSECAG00000025080 possible_ortholog 6 retrogenes
retro_ecab_104, retro_ecab_319, retro_ecab_351, retro_ecab_456, retro_ecab_497, retro_ecab_905,
Loxodonta africana ENSLAFG00000018257 ortholog_one2one 3 retrogenes
retro_lafr_1045, retro_lafr_479, retro_lafr_88,
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
retro_mmul_283, retro_mmul_63,
Monodelphis domestica ENSMODG00000012693 ortholog_one2one 2 retrogenes
retro_mdom_53, retro_mdom_750,
Nomascus leucogenys ENSNLEG00000000748 possible_ortholog 19 retrogenes
retro_nleu_1182, retro_nleu_1570, retro_nleu_1602, retro_nleu_1620, retro_nleu_1889, retro_nleu_2171, retro_nleu_2236, retro_nleu_2284, retro_nleu_2335, retro_nleu_2430, retro_nleu_2446, retro_nleu_2538, retro_nleu_2695, retro_nleu_2702, retro_nleu_2735, retro_nleu_3116, retro_nleu_479, retro_nleu_540, retro_nleu_656,
Pongo abelii ENSPPYG00000008492 possible_ortholog 20 retrogenes
retro_pabe_1546, retro_pabe_1687, retro_pabe_1709, retro_pabe_1815, retro_pabe_2177, retro_pabe_2300, retro_pabe_2320, retro_pabe_2496, retro_pabe_2625, retro_pabe_2799, retro_pabe_2800, retro_pabe_3166, retro_pabe_3278, retro_pabe_3299, retro_pabe_3513, retro_pabe_3635, retro_pabe_3829, retro_pabe_4, retro_pabe_973, retro_pabe_980,
Rattus norvegicus ENSRNOG00000004741 possible_ortholog 37 retrogenes
retro_rnor_1029, retro_rnor_1039, retro_rnor_1295, retro_rnor_1338, retro_rnor_1405, retro_rnor_1440, retro_rnor_1449, retro_rnor_1478, retro_rnor_1512, retro_rnor_1525, retro_rnor_1558, retro_rnor_1577, retro_rnor_1765, retro_rnor_1766, retro_rnor_1795, retro_rnor_1814, retro_rnor_1860, retro_rnor_1885, retro_rnor_1905, retro_rnor_1907, retro_rnor_1970, retro_rnor_1981, retro_rnor_208, retro_rnor_2169, retro_rnor_2522, retro_rnor_2536, retro_rnor_2708, retro_rnor_2773, retro_rnor_2783, retro_rnor_2921, retro_rnor_2943, retro_rnor_326, retro_rnor_426, retro_rnor_434, retro_rnor_464, retro_rnor_465, retro_rnor_829,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_305 86.29 100.00
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2. retro_ptro_467 80.61 100.00
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3. retro_ptro_525 78.50 53.57
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4. retro_ptro_673 88.78 100.00
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5. retro_ptro_737 64.02 83.16
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6. retro_ptro_1180 68.75 56.12
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7. retro_ptro_1385 72.93 67.86
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8. retro_ptro_1642 82.45 95.92
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9. retro_ptro_1676 84.76 83.67
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10. retro_ptro_1786 83.67 100.00
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11. retro_ptro_1806 58.49 53.57
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12. retro_ptro_1930 88.38 100.00
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13. retro_ptro_2036 79.80 100.00
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14. retro_ptro_2214 88.33 61.22
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15. retro_ptro_2279 81.22 100.00
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16. retro_ptro_2311 84.34 100.00
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17. retro_ptro_2645 89.80 100.00
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18. retro_ptro_2709 75.26 97.45
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19. retro_ptro_2865 80.00 54.59
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20. retro_ptro_2998 75.76 100.00
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21. retro_ptro_3109 80.25 82.65
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22. retro_ptro_3179 87.24 100.00
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Download FASTA sequences of all ENSPTRG00000009086 retrocopies