Parental gene:

CCDC59, ENSPTRG00000005266

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:82255444..82391489(-)


>ENSPTRG00000005266
ATGGCGCCGGTGAGGCGATCGGCGAAGTGGCGGCCTGGTGGTATTGAGGCGCGTGGTGAAGGGGTTTCCACTGTCGGGTA
CAGGAATAAGAATGTGAGACAGAAGACATGGCGGCCTAACCACCCGCAAGCCTTCGTGGGGAGCGTTCGCGAGGGACAAG
GCTTTGCTTTTCGAAGAAAACTGAGAATACAGCAAAGTTACAAGAAATTGCTACGGAAGGAAAAGAAGGCTCAAACGTCA
CTGGAATCTCAATTCACAGATCGATACCCAGATAATCTGAAACATCTCTATTTAGCTGAAGAGGAAAGACATAGGAAGCA
ACCAAGAAAAGTCGACCATCCTTTGTCAGAACAAGTTCACCAGCCGTTGCTTGAAGAACAGTGTAGCATTGACCAGCCTT
TATTTGAAGATCAGTGTAGCTTTGACCAGCCTCAGCCAGAAGAACAATGTATTGGAACAGTAAACTCCTTTACAATTCCA
AAGAAAAATAAAAAGAAAACATCAAATCAAAAAGCACAAGAAGAATATGAACAGGTACAAGCCAAACGTGCTGCTAAGAA
ACAAGAATTCGAGAGGAGAAAACAGGAGAGAGAAGAAGCCCAAAGGCTGTACAAAAAGAAGAAAATGGAAGTGTTTAAAA
TACTGAACAAAAAGACTAAAAAGGGCCAACCAAACTTGAATGTACAAATGGAGTACCTTCTTCAAAAAATACAAGAAAAA
TGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .13 RPM
SRP007412_cerebellum 9 .93 RPM
SRP007412_heart 10 .67 RPM
SRP007412_kidney 10 .75 RPM
SRP007412_liver 10 .97 RPM
SRP007412_testis 40 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016875 ortholog_one2one 1 retrogene
retro_amel_954,
Bos taurus ENSBTAG00000036282 ortholog_one2one 4 retrogenes
retro_btau_725, retro_btau_726, retro_btau_727, retro_btau_728,
Choloepus hoffmanni ENSCHOG00000007788 ortholog_one2one 1 retrogene
retro_chof_1648,
Dasypus novemcinctus ENSDNOG00000011546 ortholog_one2one 1 retrogene
retro_dnov_1033,
Dipodomys ordii ENSDORG00000003005 ortholog_one2one 1 retrogene
retro_dord_485,
Echinops telfairi ENSETEG00000000256 ortholog_one2one 2 retrogenes
retro_etel_1338, retro_etel_1789,
Gorilla gorilla ENSGGOG00000025296 ortholog_one2one 2 retrogenes
retro_ggor_1386, retro_ggor_99,
Microcebus murinus ENSMICG00000000967 ortholog_one2one 4 retrogenes
retro_mmur_1456, retro_mmur_354, retro_mmur_689, retro_mmur_909,
Oryctolagus cuniculus ENSOCUG00000017824 ortholog_one2one 2 retrogenes
retro_ocun_1782, retro_ocun_498,
Otolemur garnettii ENSOGAG00000004383 ortholog_one2one 1 retrogene
retro_ogar_2065,
Tupaia belangeri ENSTBEG00000008887 ortholog_one2one 7 retrogenes
retro_tbel_1515, retro_tbel_2047, retro_tbel_2126, retro_tbel_302, retro_tbel_3391, retro_tbel_3721, retro_tbel_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1270 53.17 50.62
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Download FASTA sequences of all ENSPTRG00000005266 retrocopies