Parental gene:

CHORDC1, ENSPTRG00000004164

Aliases:None
Description:Pan troglodytes cysteine and histidine-rich domain (CHORD) containing 1 (CHORDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246422]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:87951137..87973993(-)


>ENSPTRG00000004164
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCACGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAGCTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCAGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAGAAAGATGACACAACAGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .77 RPM
SRP007412_cerebellum 19 .18 RPM
SRP007412_heart 21 .54 RPM
SRP007412_kidney 20 .35 RPM
SRP007412_liver 11 .39 RPM
SRP007412_testis 47 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000903 ortholog_one2one 4 retrogenes
retro_cjac_2220, retro_cjac_2927, retro_cjac_4147, retro_cjac_815,
Echinops telfairi ENSETEG00000013104 ortholog_one2one 2 retrogenes
retro_etel_1713, retro_etel_1860,
Felis catus ENSFCAG00000019389 ortholog_one2many 1 retrogene
retro_fcat_137,
Homo sapiens ENSG00000110172 ortholog_one2one 3 retrogenes
retro_hsap_1452, retro_hsap_1903, retro_hsap_2252,
Gorilla gorilla ENSGGOG00000027396 ortholog_one2one 3 retrogenes
retro_ggor_1117, retro_ggor_1118, retro_ggor_1679,
Loxodonta africana ENSLAFG00000017340 ortholog_one2one 1 retrogene
retro_lafr_401,
Macaca mulatta ENSMMUG00000005209 ortholog_one2one 2 retrogenes
retro_mmul_1024, retro_mmul_1923,
Nomascus leucogenys ENSNLEG00000007079 ortholog_one2one 5 retrogenes
retro_nleu_1085, retro_nleu_1232, retro_nleu_1320, retro_nleu_752, retro_nleu_981,
Oryctolagus cuniculus ENSOCUG00000014147 ortholog_one2one 1 retrogene
retro_ocun_1595,
Otolemur garnettii ENSOGAG00000003523 ortholog_one2one 1 retrogene
retro_ogar_2724,
Pongo abelii ENSPPYG00000003764 ortholog_one2one 5 retrogenes
retro_pabe_1199, retro_pabe_1554, retro_pabe_1734, retro_pabe_1959, retro_pabe_461,
Tupaia belangeri ENSTBEG00000002910 ortholog_one2one 1 retrogene
retro_tbel_2891,
Tarsius syrichta ENSTSYG00000004205 ortholog_one2one 1 retrogene
retro_tsyr_1581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_988 90.00 65.96
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2. retro_ptro_1253 90.75 99.70
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3. retro_ptro_1595 91.30 55.42
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Download FASTA sequences of all ENSPTRG00000004164 retrocopies