Parental gene:

HMGN2, ENSPTRG00000000386

Aliases:None
Description:high mobility group nucleosomal binding domain 2 [Source:HGNC Symbol;Acc:4986]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:26485582..26490142(+)


>ENSPTRG00000000386
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGGTGAAGGACGAACCACAGAGAAGATCCGCGAG
GTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCA
AAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCA
CAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 61 .63 RPM
SRP007412_cerebellum 44 .95 RPM
SRP007412_heart 43 .75 RPM
SRP007412_kidney 98 .88 RPM
SRP007412_liver 50 .51 RPM
SRP007412_testis 70 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000001787 possible_ortholog 3 retrogenes
retro_dord_10, retro_dord_401, retro_dord_511,
Felis catus ENSFCAG00000012812 possible_ortholog 3 retrogenes
retro_fcat_1842, retro_fcat_4, retro_fcat_530,
Homo sapiens ENSG00000198830 ortholog_one2one 51 retrogenes
retro_hsap_100, retro_hsap_114, retro_hsap_1208, retro_hsap_1368, retro_hsap_1395, retro_hsap_1427, retro_hsap_1471, retro_hsap_1492, retro_hsap_1512, retro_hsap_1517, retro_hsap_1518, retro_hsap_1586, retro_hsap_1670, retro_hsap_1684, retro_hsap_1787, retro_hsap_1834, retro_hsap_1931, retro_hsap_1934, retro_hsap_2082, retro_hsap_2116, retro_hsap_2296, retro_hsap_2309, retro_hsap_233, retro_hsap_2564, retro_hsap_2592, retro_hsap_2728, retro_hsap_273, retro_hsap_2755, retro_hsap_2779, retro_hsap_2849, retro_hsap_2914, retro_hsap_318, retro_hsap_3189, retro_hsap_3339, retro_hsap_3372, retro_hsap_3412, retro_hsap_3515, retro_hsap_3616, retro_hsap_3755, retro_hsap_3896, retro_hsap_4124, retro_hsap_4138, retro_hsap_4297, retro_hsap_4791, retro_hsap_4914, retro_hsap_601, retro_hsap_688, retro_hsap_689, retro_hsap_718, retro_hsap_793, retro_hsap_849,
Gorilla gorilla ENSGGOG00000000971 possible_ortholog 11 retrogenes
retro_ggor_114, retro_ggor_146, retro_ggor_162, retro_ggor_166, retro_ggor_182, retro_ggor_186, retro_ggor_197, retro_ggor_23, retro_ggor_38, retro_ggor_40, retro_ggor_54,
Macropus eugenii ENSMEUG00000010966 possible_ortholog 8 retrogenes
retro_meug_1178, retro_meug_126, retro_meug_1859, retro_meug_1910, retro_meug_1997, retro_meug_248, retro_meug_369, retro_meug_76,
Mus musculus ENSMUSG00000003038 possible_ortholog 2 retrogenes
retro_mmus_202, retro_mmus_2582,
Otolemur garnettii ENSOGAG00000032571 possible_ortholog 14 retrogenes
retro_ogar_1438, retro_ogar_1445, retro_ogar_1603, retro_ogar_1668, retro_ogar_1687, retro_ogar_1998, retro_ogar_2097, retro_ogar_2210, retro_ogar_2231, retro_ogar_2424, retro_ogar_287, retro_ogar_2989, retro_ogar_3411, retro_ogar_52,
Tursiops truncatus ENSTTRG00000005681 possible_ortholog 5 retrogenes
retro_ttru_1392, retro_ttru_1443, retro_ttru_3, retro_ttru_345, retro_ttru_788,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_59 86.67 100.00
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2. retro_ptro_128 91.21 100.00
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3. retro_ptro_203 91.21 100.00
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4. retro_ptro_229 74.71 95.56
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5. retro_ptro_257 88.76 97.78
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6. retro_ptro_445 91.38 64.44
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7. retro_ptro_493 77.78 75.56
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8. retro_ptro_495 81.11 98.89
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9. retro_ptro_512 81.82 96.67
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10. retro_ptro_543 71.43 98.89
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11. retro_ptro_552 87.50 96.67
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12. retro_ptro_590 84.27 98.89
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13. retro_ptro_827 67.42 98.89
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14. retro_ptro_939 92.22 100.00
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15. retro_ptro_958 96.67 100.00
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16. retro_ptro_1011 86.67 100.00
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17. retro_ptro_1024 84.62 100.00
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18. retro_ptro_1026 67.78 100.00
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19. retro_ptro_1027 86.67 100.00
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20. retro_ptro_1040 98.90 100.00
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21. retro_ptro_1053 68.13 100.00
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22. retro_ptro_1067 83.52 100.00
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23. retro_ptro_1094 80.65 100.00
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24. retro_ptro_1197 67.78 96.67
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25. retro_ptro_1235 91.21 100.00
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26. retro_ptro_1291 71.43 97.78
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27. retro_ptro_1292 66.30 100.00
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28. retro_ptro_1495 77.33 83.33
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29. retro_ptro_1516 90.11 100.00
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30. retro_ptro_1532 87.78 100.00
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31. retro_ptro_1549 83.33 100.00
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32. retro_ptro_1625 91.21 100.00
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33. retro_ptro_1633 84.78 100.00
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34. retro_ptro_1837 77.42 100.00
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35. retro_ptro_1844 64.29 77.78
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36. retro_ptro_1863 97.78 100.00
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37. retro_ptro_1880 93.33 100.00
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38. retro_ptro_1929 93.33 100.00
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39. retro_ptro_1970 67.06 91.11
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40. retro_ptro_2255 90.80 95.56
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41. retro_ptro_2292 94.44 100.00
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42. retro_ptro_2317 86.81 100.00
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43. retro_ptro_2387 78.02 100.00
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44. retro_ptro_2445 92.00 83.33
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45. retro_ptro_2461 94.44 100.00
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46. retro_ptro_2549 82.22 100.00
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47. retro_ptro_2650 84.78 100.00
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48. retro_ptro_2801 84.62 100.00
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49. retro_ptro_2812 71.11 100.00
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50. retro_ptro_2840 62.50 70.00
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51. retro_ptro_2913 87.91 100.00
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52. retro_ptro_2970 80.00 71.11
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53. retro_ptro_3187 83.52 100.00
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54. retro_ptro_3276 77.53 98.89
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Download FASTA sequences of all ENSPTRG00000000386 retrocopies