Parental gene:

DCAF12, ENSPPYG00000019127

Aliases:None
Description:DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Organism:Orangutan (Pongo abelii)
Coordinates:9:27490692..27534281(+)


>ENSPPYG00000019127
ATGGCCCGGAAAGTAGTTAGCAGGAAGCGGAAGGCGCCCGCCTCGCCGGGAGCTGGGAGCGACGCTCAGGGCCCGCAGTT
TGGCTGGGATCACTCGCTTCACAAAAGGAAAAGACTTCCTCCTGTGAAGAGATCCTTAGTATACTACTTGAAGAACCGCG
AAGTCAGGCTACAGAATGAAACCAGCTACTCTCGAGTGTTGCATGGTTATGCAGCACAGCAACTTCCCAGTCTCCTGAAG
GAGAGAGAGTTTCACCTTGGGACCCTTAATAAAGTGTTTGCATCTCAGTGGTTGAATCATAGGCAAGTGGTGTGTGGCAC
AAAATGCAACACGCTATTTGTCGTAGATGTCCAGACAAGCCAGATCACCAAGATCCCCATTCTGAAAGACCGAGAGCCTG
GAGGTGTGACCCAGCAGGGCTGTGGTATCCATGCCATCGAGCTGAATCCTTCTAGAACACTGCTAGCCACTGGAGGAGAC
AACCCCAACAGTCTTGCCATCTATCGACTACCTACGCTGGATCCTGTGTGTGTAGGAGATGATGGACACAAGGACTGGAT
CTTTTCCATCGCATGGATCAGCGACACTATGGCAGTGTCTGGCTCACGTGATGGTTCTATGGGACTCTGGGAGGTGACAG
ATGATGTTTTGACCAAAAGTGATGCGAGACACAATGTGTCACGGGTCCCTGTGTATGCACACATCACTCACAAGGCCTTA
AAGGACATCCCCAAAGAAGACACAAACCCTGACAACTGCAAGGTTCGGGCTCTGGCCTTCAACAACAAGAACAAGGAACT
GGGAGCAGTGTCTCTGGATGGCTACTTTCATCTCTGGAAGGCTGAAAATACACTATCTAAGCTCCTCTCCACCAAACTGC
CATATTGCCGTGAGAATGTGTGTCTGGCCTATGGTAGTGAATGGTCAGTTTATGCAGTGGGCTCCCAAGCTCATGTCTCC
TTCTTGGATCCACGGCAGCCATCATACAACGTCAAGTCTGTCTGTTCCAGGGAGCGAGGCAGTGGAATCCGGTCCGTGAG
TTTCTATGAGCACATCATCACTGTGGGAACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAGAGATTTCTGG
AAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCTAGACTAGCAGGGGAGAATCTGAAACTAACCACTGGCAAAGGCTGG
CTGAATCATGATGAAACCTGGAGGAATTACTTTTCAGACATTGACTTCTTCCCCAATGCTGTTTACACCCACTGCTACGA
CTCGTCTGGAACGAAACTCTTTGTGGCAGGAGGTCCCCTCCCTTCAGGGCTCCATGGAAACTATGCTGGACTCTGGAGTT
AA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .72 RPM
SRP007412_cerebellum 14 .11 RPM
SRP007412_heart 7 .50 RPM
SRP007412_kidney 18 .06 RPM
SRP007412_liver 15 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000309 ortholog_one2one 1 retrogene
retro_amel_73,
Bos taurus ENSBTAG00000021573 ortholog_one2one 3 retrogenes
retro_btau_1794, retro_btau_1795, retro_btau_1796,
Equus caballus ENSECAG00000023064 ortholog_one2one 2 retrogenes
retro_ecab_1128, retro_ecab_1129,
Erinaceus europaeus ENSEEUG00000013279 ortholog_one2one 1 retrogene
retro_eeur_403,
Microcebus murinus ENSMICG00000005881 ortholog_one2one 1 retrogene
retro_mmur_14,
Macaca mulatta ENSMMUG00000017458 ortholog_one2one 1 retrogene
retro_mmul_202,
Nomascus leucogenys ENSNLEG00000004996 ortholog_one2one 1 retrogene
retro_nleu_6,
Otolemur garnettii ENSOGAG00000015799 ortholog_one2one 1 retrogene
retro_ogar_237,
Ochotona princeps ENSOPRG00000001281 ortholog_one2one 2 retrogenes
retro_opri_1178, retro_opri_470,
Pteropus vampyrus ENSPVAG00000008654 ortholog_one2one 1 retrogene
retro_pvam_16,
Sus scrofa ENSSSCG00000010986 ortholog_one2one 1 retrogene
retro_sscr_17,
Ictidomys tridecemlineatus ENSSTOG00000006904 ortholog_one2one 1 retrogene
retro_itri_168,
Tarsius syrichta ENSTSYG00000014394 ortholog_one2one 1 retrogene
retro_tsyr_1965,
Tursiops truncatus ENSTTRG00000010591 ortholog_one2one 1 retrogene
retro_ttru_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_64 65.23 86.53
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Download FASTA sequences of all ENSPPYG00000019127 retrocopies