Parental gene:

PSMC2, ENSPPYG00000017883

Aliases:None
Description:26S protease regulatory subunit 7 [Source:RefSeq peptide;Acc:NP_001126144]
Organism:Orangutan (Pongo abelii)
Coordinates:7:100027937..100049676(+)


>ENSPPYG00000017883
ATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGCCCATCCGAGCTCTGGATGA
GGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATCAAGCAAGTTGAAGATGACATTCAGC
AACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTCTGGGATTTG
GCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGGTTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGA
GGACCCAAAATACATTATCAATGTAAAGCAGTTTGCCAAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACA
TTGAAGAAGGGATGAGAGTGGGTGTGGATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACA
GTTACCATGATGCAGGTGGAAGAGAAACCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACT
GCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGC
TCTTTGGTCCACCCGGTACAGGCAAGACACTCTGTGCACGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTT
ATTGGATCTGAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAA
AAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACAATG
AAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTCGAGGCAATATTAAAGTGCTGATGGCC
ACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGAATTTAGCTTGCCCGA
TCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAGATATCAGATTTGAATTGTTAG
CACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGTGTCTGCACAGAGGCTGGTATGTTTGCCATCAGAGCACGG
CGAAAAATCGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATTCAGTGCTACTCC
TCGTTACATGACATACAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 59 .77 RPM
SRP007412_cerebellum 57 .15 RPM
SRP007412_heart 39 .32 RPM
SRP007412_kidney 56 .52 RPM
SRP007412_liver 53 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000005729 ortholog_one2one 1 retrogene
retro_etel_1316,
Homo sapiens ENSG00000161057 ortholog_one2one 2 retrogenes
retro_hsap_2705, retro_hsap_3980,
Gorilla gorilla ENSGGOG00000009167 ortholog_one2one 3 retrogenes
retro_ggor_1885, retro_ggor_2672, retro_ggor_2673,
Myotis lucifugus ENSMLUG00000008853 ortholog_one2one 1 retrogene
retro_mluc_1642,
Macaca mulatta ENSMMUG00000003432 ortholog_one2one 2 retrogenes
retro_mmul_1538, retro_mmul_2299,
Monodelphis domestica ENSMODG00000017238 ortholog_one2one 1 retrogene
retro_mdom_868,
Mustela putorius furo ENSMPUG00000018268 ortholog_one2one 3 retrogenes
retro_mputfur_1025, retro_mputfur_232, retro_mputfur_387,
Nomascus leucogenys ENSNLEG00000009274 ortholog_one2one 2 retrogenes
retro_nleu_1578, retro_nleu_2042,
Otolemur garnettii ENSOGAG00000005164 ortholog_one2one 2 retrogenes
retro_ogar_2198, retro_ogar_2309,
Pan troglodytes ENSPTRG00000019553 ortholog_one2one 2 retrogenes
retro_ptro_1826, retro_ptro_2702,
Tarsius syrichta ENSTSYG00000000666 ortholog_one2one 4 retrogenes
retro_tsyr_1031, retro_tsyr_1272, retro_tsyr_1857, retro_tsyr_2178,
Vicugna pacos ENSVPAG00000008921 ortholog_one2one 1 retrogene
retro_vpac_44,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2257 88.52 81.99
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2. retro_pabe_2412 87.23 62.82
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Download FASTA sequences of all ENSPPYG00000017883 retrocopies