Parental gene:

SS18L2, ENSPPYG00000013979

Aliases:None
Description:synovial sarcoma translocation gene on chromosome 18-like 2 [Source:HGNC Symbol;Acc:15593]
Organism:Orangutan (Pongo abelii)
Coordinates:3:104065585..104070467(-)


>ENSPPYG00000013979
ATGTCGGTGGCCTTCGTACCGGACTGGCTGAGGGGCAAGGCGGAAGTCAATCAAGAGACTATCCAGCGGCTCCTTGAGGA
GAATGACCAGCTGATCCGCTGTATTGTGGAGTATCAGAACAAGGGCCGCGGGAACGAGTGCGTCCAGTACCAGCATGTGT
TACATAGAAATCTCATTTATTTGGCTACCATTGCAGATGCCAGTCCAACCAGCACTTCAAAAGCAATGGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .66 RPM
SRP007412_cerebellum 15 .93 RPM
SRP007412_heart 6 .41 RPM
SRP007412_kidney 8 .82 RPM
SRP007412_liver 13 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000989 ortholog_one2one 1 retrogene
retro_acar_189,
Dipodomys ordii ENSDORG00000015005 possible_ortholog 4 retrogenes
retro_dord_286, retro_dord_39, retro_dord_643, retro_dord_658,
Homo sapiens ENSG00000008324 ortholog_one2one 1 retrogene
retro_hsap_557,
Loxodonta africana ENSLAFG00000021542 possible_ortholog 2 retrogenes
retro_lafr_754, retro_lafr_92,
Myotis lucifugus ENSMLUG00000013024 possible_ortholog 1 retrogene
retro_mluc_21,
Macaca mulatta ENSMMUG00000031677 ortholog_one2one 1 retrogene
retro_mmul_2392,
Nomascus leucogenys ENSNLEG00000005848 ortholog_one2one 1 retrogene
retro_nleu_2639,
Ochotona princeps ENSOPRG00000015198 possible_ortholog 4 retrogenes
retro_opri_401, retro_opri_516, retro_opri_542, retro_opri_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_513 84.38 83.12
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2. retro_pabe_651 87.50 83.12
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Download FASTA sequences of all ENSPPYG00000013979 retrocopies