Parental gene:

CASC4, ENSPPYG00000006428

Aliases:None
Description:protein CASC4 [Source:RefSeq peptide;Acc:NP_001126659]
Organism:Orangutan (Pongo abelii)
Coordinates:15:40769077..40889703(+)


>ENSPPYG00000006428
ATGGTAGGTTTCGGGGCCAACCGGCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGCTGGTGGTGATCGTCGT
CCTCGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGGAGGTGGCCGAGCTGCAGGGCCAGGTCC
AGCGCACCGAAGTGGCCCGCGGGCGGCTGGAAAAGCGCAATTCGGACCTCTTGCTGTTGGTGGACACGCACAAGAAACAG
ATCGACCAGAAGGAGGCCGACTACGGCCGCCTCAGCAGCCGGCTGCAGGCCAGAGAGGGCCTCGGGAAGAGATGCGAGGA
TGACAAGGTTAAACTACAGAACAACATATCGTATCAGATGGCAGACATACATCATTTAAAGGAGCAACTTGCCGAGCTTC
GTCAGGAGTTTCTTCGACAAGAAGACCAGCTTCAGGACTATAGGAAGAACAATACTTACCTTGTGAAGAGGTTAGAATAT
GAAAGTTTTCAGTGTGGACAGCAGATCAAGGAATTGAGAGCACAACATGAAGAAAATATTAAAAAGTTAGCAGACCAGTT
TTTACAGGAACAAAAGCAAGAGGCCCACAAGATTCAATCAAATGATGGAAAAGAATTGGATATAAACGATCAAGTAGTAC
CTAAAAATATTCCAAAAGTAGCTGAGAATGTTGCAGATAAGAATGAAGAACCCTCAAGCAATCATATTCCACATGGGAAA
GAACAAATCAAAAGAGGTGGTGATGCAGGGATGCCTGGAATAGAAGAGAATGACCTAGCAAAAGTTGATGATCTTCCCCC
TGCTTTAAGGAAGCCTCCTATTTCAGTTTCTCAACATGAAAGTCATCAAGCAATCTCCCATATTCCAACTGGACAACCTC
TCTCCCCAAATATGCCTCCAGATTCACACGTAAACCACAATGGAAACCCCGGTACTTCAAAACAGAATCCTTCCAGTCCT
CTTCAGCGTTTAATTCCAGGCTCAAACTTGGACAGTGAACCTAGAATTCAAACAGATATACTAAAGCAGGCTACCAAGGA
CAGAGTCAGTGATTTCCATAAATTGAAGCAAAGCCGATTCTTTGATGAAAATGAATCCCCTGTTGATCCGCAGCATGGCT
CTAAACTGGCGGATTATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGACAAGCAGGCTGAGCTGGCTTACAAT
GAGGAAGAAGATGGTGATGGTGGAGAGGAAGACGTCCAAGATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGACTA
TGGAAAGCAACATTTCAATGATGTCCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 47 .00 RPM
SRP007412_cerebellum 51 .68 RPM
SRP007412_heart 15 .32 RPM
SRP007412_kidney 36 .56 RPM
SRP007412_liver 18 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006998 ortholog_one2many 4 retrogenes
retro_chof_1422, retro_chof_1445, retro_chof_2453, retro_chof_627,
Homo sapiens ENSG00000166734 ortholog_one2one 1 retrogene
retro_hsap_1238,
Nomascus leucogenys ENSNLEG00000005533 ortholog_one2one 1 retrogene
retro_nleu_2857,
Oryctolagus cuniculus ENSOCUG00000005362 ortholog_one2many 1 retrogene
retro_ocun_1472,
Pan troglodytes ENSPTRG00000007010 ortholog_one2one 1 retrogene
retro_ptro_852,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1083 91.04 96.33
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Download FASTA sequences of all ENSPPYG00000006428 retrocopies