Parental gene:

LDHAL6A, ENSPPYG00000003435

Aliases:None
Description:lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335]
Organism:Orangutan (Pongo abelii)
Coordinates:11:51651858..51676135(-)


>ENSPPYG00000003435
ATGGCAACTGTCAAGAGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGG
AACTGGATCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGTTG
ATGAAGGCAAACTGAAGGGCGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGC
AAAGATTACCTGGTCACTGCAAACTCCAATCTAGTGATTATCACGGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCT
TGATTTAGTCCAGCGAAATGTGTCCATCTTTAAATTAATGATTCCCAATATTACCCAGTACAGTCCTCACTGCAAACTGC
TTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGTGCATTTCCCAAAAACCGTGTTATTGGA
AGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGG
GCTGATCCTTGGAGAGCATGGCGACTCAAGTGTGCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATC
TGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAG
ATGGTCAAAATGAAAGGTTACACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCT
TAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGAAATATTCCTTAGTGTCCCATGTA
TCCTGGGAGAGAATGGTATCACAGACCTCATAAAAGTAAAACTGACTTTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCA
GAAACACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .44 RPM
SRP007412_cerebellum 1 .34 RPM
SRP007412_heart 0 .12 RPM
SRP007412_kidney 0 .30 RPM
SRP007412_liver 0 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007067 ortholog_one2one 2 retrogenes
retro_cjac_164, retro_cjac_2180,
Homo sapiens ENSG00000166800 ortholog_one2one 2 retrogenes
retro_hsap_42, retro_hsap_905,
Macaca mulatta ENSMMUG00000014614 ortholog_one2one 2 retrogenes
retro_mmul_1111, retro_mmul_261,
Nomascus leucogenys ENSNLEG00000017780 ortholog_one2one 2 retrogenes
retro_nleu_29, retro_nleu_378,
Otolemur garnettii ENSOGAG00000009261 ortholog_one2one 1 retrogene
retro_ogar_2662,
Pongo abelii ENSPPYG00000003437 within_species_paralog 5 retrogenes
retro_pabe_2002, retro_pabe_2039, retro_pabe_2423, retro_pabe_3407, retro_pabe_364,
Pongo abelii ENSPPYG00000004356 within_species_paralog 3 retrogenes
retro_pabe_1738, retro_pabe_1744, retro_pabe_3780,
Pan troglodytes ENSPTRG00000003423 ortholog_one2one 1 retrogene
retro_ptro_62,
Tarsius syrichta ENSTSYG00000008062 possible_ortholog 4 retrogenes
retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_203 84.04 100.00
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2. retro_pabe_779 64.12 100.00
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Download FASTA sequences of all ENSPPYG00000003435 retrocopies