Parental gene:

RNPC3, ENSPPYG00000001102

Aliases:None
Description:RNA-binding protein 40 [Source:RefSeq peptide;Acc:NP_001126576]
Organism:Orangutan (Pongo abelii)
Coordinates:1:124976762..125033783(-)


>ENSPPYG00000001102
ATGGCAGCTCCTGAGCAGCCACTTGCGATATCAAGGGGATGCACGAGCTCCTCCTCGCTTTCCCCGCCTCGGGGCGACCG
AACCCTTCTGGTCAGGCACCTGCCGGCTGAGCTTACCGCTGAGGAGAAAGAGGACTTGCTGAAGTACTTCGGGGCTCAGT
CTGTGCGGGTCCTGTCAGATAAGGGGCGACTGAAACATACAGCTTTTGCCACATTCCCTAATGAAAAAGCAGCTATAAAG
GCACTGACAAGACTCCATCAACTGAAACTTTTAGGTCATACTTTAGTCGTTGAATTTGCAAAAGAGCAAGATCGAGTTCA
CTCCCCATGTCCCACTTCAGGCTCTGAAAAAAAAAAAAGGTCTGATGACCCTGTTGAAGATGATAAAGAAAAGAAAGAAC
TTGGTTATTTAACAGTAGAAAACGGAATTGCACCAAACCATGGGCTGACTTTTCCTTTAAATTCATGCCTCAAGTATATG
TACCCACCACCCTTCCAGCACAATCCTAGCCAACATCGTAAATGCCTGGCAAGTGTGCCTAAGTTCTATGTACAGGTCCT
TCATCTTATGAATAAAATGAATTTGCCCACACCTTTTGGACCAATTACTGCGCGACCTCCCATGTATGAAGACTATATGC
CATTGCATGCACCTCTTCCACCCACATCTCCTCAGCCACCGGAGGAACCTCCTTTGCCAGAGGAGGATGAGGAGTTATCT
AGTGAAGAATCAGAATATGAAAGCACTGATGATGAGGACCGACAGAGAATGAACAAATTAATGGAACTAGCAAATCTTCA
GCCCAAAAGACCTAAAACAATAAAGCAGCGCCATGTGAGGAAAAAGAGAAAAATAAAGGATATGTTGAATACACCTTTGT
GTCCTTCACACAGCAGTTTACATCCAGTGCTGTTACCTTCAGATGTATTTGACCAACCACAACCTGTAGGTAATAAAAGA
ATTGAATTCCATATATCTACCGACATGCCAGCTGCATTTAAGAAAGATTTAGAAAAGGAACAAAATTGTGAGGAAAAAAA
TCATGATTTACCTGCTACTGAAGTTGATGCATCCAATATAGGATTTGGAAAAATCTTCCCCAAACCTAATTTGGACATCA
CAGAGGAGATTAAAGAAGACTCTGATGAAATGCCATCAGAATGTATTTCTAGAAGGGAATTGGAAAAGGGCAGAATTTCT
AGAGAAGAAATGGAAACACTTTCAGTTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAATTTATGTAAAGAATTT
AGCTAAACATGTTGAAGAAAAGGTAGGTGTAAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .33 RPM
SRP007412_cerebellum 19 .21 RPM
SRP007412_heart 4 .27 RPM
SRP007412_kidney 14 .35 RPM
SRP007412_liver 7 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000035686 ortholog_one2one 1 retrogene
retro_cjac_1397,
Homo sapiens ENSG00000185946 ortholog_one2one 1 retrogene
retro_hsap_2800,
Macaca mulatta ENSMMUG00000018039 ortholog_one2one 1 retrogene
retro_mmul_1435,
Nomascus leucogenys ENSNLEG00000012013 possible_ortholog 1 retrogene
retro_nleu_1539,
Nomascus leucogenys ENSNLEG00000015566 ortholog_one2one 1 retrogene
retro_nleu_1538,
Pan troglodytes ENSPTRG00000033902 ortholog_one2one 1 retrogene
retro_ptro_1897,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2224 84.91 71.69
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Download FASTA sequences of all ENSPPYG00000001102 retrocopies