Parental gene:

COX20, ENSOPRG00000004534

Aliases:None
Description:COX20 cytochrome C oxidase assembly factor [Source:HGNC Symbol;Acc:26970]
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_16415:392..6616(+)


>ENSOPRG00000004534
ATGGACTCCGTGTCGGAGCCCGGCGAGCCCGGCAAGGGGAAGGTATATTGTATATGGTTATCATTCCAGCATTTATCATA
TTGGAAGACCTTTAAACTCCTAGGAATTTTAGATGTCGAAAACACTCCCTGTGCACGGGACTCCATATTGTATGGTTCAC
TGGGATCTGCTGTAAGTGGCCTGGGACACTTCTTGTTTACTAGTAGAATCAGAAGATCCTGTGATGTTGGAGTAGGAGGA
TTCATCTTGGTGACTTTAGGATGCTGGTTCCACTGTAGGTACAATTATGCAAAGCAAAGAATCCAGGAGAGAATTGCCAG
AGAAGGAATTAAAAATAAGATTTTATATGAAAGTACTCACCTTGATCCTCAAAGAAAACACAACAAAAGCAGCAATGGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001381 ortholog_one2one 4 retrogenes
retro_chof_1820, retro_chof_207, retro_chof_299, retro_chof_825,
Erinaceus europaeus ENSEEUG00000012147 ortholog_one2one 1 retrogene
retro_eeur_104,
Homo sapiens ENSG00000203667 ortholog_one2one 1 retrogene
retro_hsap_587,
Myotis lucifugus ENSMLUG00000026132 ortholog_one2one 7 retrogenes
retro_mluc_1273, retro_mluc_1505, retro_mluc_1863, retro_mluc_1954, retro_mluc_2343, retro_mluc_792, retro_mluc_958,
Monodelphis domestica ENSMODG00000024669 ortholog_one2one 1 retrogene
retro_mdom_2014,
Mus musculus ENSMUSG00000026500 ortholog_one2one 1 retrogene
retro_mmus_2957,
Nomascus leucogenys ENSNLEG00000004027 ortholog_one2one 1 retrogene
retro_nleu_2518,
Pongo abelii ENSPPYG00000000053 ortholog_one2one 1 retrogene
retro_pabe_2090,
Pteropus vampyrus ENSPVAG00000002577 ortholog_one2one 1 retrogene
retro_pvam_945,
Rattus norvegicus ENSRNOG00000004553 ortholog_one2one 2 retrogenes
retro_rnor_1033, retro_rnor_2184,
Sorex araneus ENSSARG00000004625 ortholog_one2one 2 retrogenes
retro_sara_167, retro_sara_470,
Tupaia belangeri ENSTBEG00000015272 ortholog_one2one 4 retrogenes
retro_tbel_1186, retro_tbel_3207, retro_tbel_3838, retro_tbel_3926,
Tarsius syrichta ENSTSYG00000005644 ortholog_one2one 1 retrogene
retro_tsyr_100,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_31 56.58 57.14
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2. retro_opri_287 64.49 78.95
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3. retro_opri_585 56.58 57.14
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4. retro_opri_676 87.00 73.68
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5. retro_opri_720 57.32 59.40
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6. retro_opri_1072 64.49 78.95
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Download FASTA sequences of all ENSOPRG00000004534 retrocopies