Parental gene:

TUBA1A, ENSOCUG00000027812

Aliases:None
Description:tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:33455918..33459528(-)


>ENSOCUG00000027812
ATGCGTGAGTGCATCTCCATCCACGTCGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACGGGCGCTGGCAAGCACGTGCCCAGGGCCGTGTTTGTAGACCTGGAGCCTACGGTCATTGATGAAGTTCGCACC
GGCACCTACCGCCAGCTCTTCCACCCCGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGCGGGCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCCTGGACCGAATTCGCAAGCTGGCTGACCAGTGCACGGGCCTGCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCTGTCGAT
TACGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCCCCCCAGGTTTCCACAGCTGTGGTGGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATCGAGCGCCCCACCTACACTAACCTGAATAGGTTGATAGGTCAAATTGTATCCTCTATCACAGCT
TCCCTGCGGTTTGACGGAGCCCTGAATGTTGATCTAACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCCGTCATCTCTGCTGAGAAAGCCTACCACGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCGGCCAACCAGATGGTGAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGCGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCTACCATCAAGACCAAACGTACCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACGGTGGTGCCTGGTGGAGACCTGGCCAAGGTGCAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGGGAGGGCATGGAGGAGGGAGAGTTTTCTGAAGCTCGTGAGGACATGGCTGC
CCTGGAGAAGGATTACGAGGAGGTTGGTGTGGATTCTGTTGAAGGTGAGGGTGAGGAGGAAGGAGAGGAATACTAA

Library Parental gene expression (RPM)
SRP017611_brain 513 .97 RPM
SRP017611_kidney 28 .38 RPM
SRP017611_liver 7 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001489 ortholog_one2one 3 retrogenes
retro_btau_251, retro_btau_350, retro_btau_929,
Callithrix jacchus ENSCJAG00000020894 ortholog_one2one 2 retrogenes
retro_cjac_1209, retro_cjac_3157,
Dasypus novemcinctus ENSDNOG00000004121 ortholog_one2one 1 retrogene
retro_dnov_43,
Equus caballus ENSECAG00000013798 ortholog_one2one 1 retrogene
retro_ecab_223,
Homo sapiens ENSG00000167552 ortholog_one2one 1 retrogene
retro_hsap_3313,
Nomascus leucogenys ENSNLEG00000017836 ortholog_one2many 2 retrogenes
retro_nleu_245, retro_nleu_2757,
Oryctolagus cuniculus ENSOCUG00000028032 within_species_paralog 1 retrogene
retro_ocun_111,
Pteropus vampyrus ENSPVAG00000004645 ortholog_one2one 2 retrogenes
retro_pvam_1283, retro_pvam_414,
Rattus norvegicus ENSRNOG00000004559 ortholog_one2one 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,
Vicugna pacos ENSVPAG00000005749 ortholog_one2one 4 retrogenes
retro_vpac_157, retro_vpac_210, retro_vpac_429, retro_vpac_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_197 99.33 100.00
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Download FASTA sequences of all ENSOCUG00000027812 retrocopies