Parental gene:

GABARAPL1, ENSOCUG00000016834

Aliases:None
Description:GABA(A) receptor-associated protein like 1 [Source:HGNC Symbol;Acc:4068]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:8:28631919..28639811(-)


>ENSOCUG00000016834
CTGCGGTGCATCATGAAGTTCCAGTATAAGGAGGACCATCCCTTTGAGTATCGGAAAAAGGAAGGAGAAAAGATCCGGAA
GAAGTATCCGGACAGGGTCCCTGTGATCGTGGAGAAGGCACCTAAAGCCAGGGTGCCGGATCTGGACAAGAGGAAGTACC
TCGTGCCCTCTGACCTCACCGTTGGCCAGTTCTACTTCTTAATCCGGAAGAGGATCCACCTGAGACCTGAGGACGCCTTA
TTCTTCTTTGTCAACAACACCATCCCTCCCACTAGTGCCACCATGGGCCAGCTGTATGAGGACAACCATGAGGAAGACTA
TTTTCTGTATGTGGCCTACAGCGATGAGAGTGTCTATGGGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 174 .78 RPM
SRP017611_kidney 234 .13 RPM
SRP017611_liver 56 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001218 ortholog_one2one 1 retrogene
retro_chof_329,
Cavia porcellus ENSCPOG00000006718 ortholog_one2one 1 retrogene
retro_cpor_232,
Homo sapiens ENSG00000139112 ortholog_one2one 1 retrogene
retro_hsap_60,
Macaca mulatta ENSMMUG00000002197 ortholog_one2one 1 retrogene
retro_mmul_2235,
Oryctolagus cuniculus ENSOCUG00000006997 within_species_paralog 1 retrogene
retro_ocun_311,
Oryctolagus cuniculus ENSOCUG00000022970 within_species_paralog 4 retrogenes
retro_ocun_1155, retro_ocun_572, retro_ocun_731, retro_ocun_784,
Sarcophilus harrisii ENSSHAG00000007434 ortholog_one2many 1 retrogene
retro_shar_82,
Ictidomys tridecemlineatus ENSSTOG00000002246 ortholog_one2one 1 retrogene
retro_itri_391,
Tarsius syrichta ENSTSYG00000005307 ortholog_one2one 19 retrogenes
retro_tsyr_1045, retro_tsyr_1070, retro_tsyr_1101, retro_tsyr_1137, retro_tsyr_1308, retro_tsyr_1413, retro_tsyr_1467, retro_tsyr_1481, retro_tsyr_1671, retro_tsyr_1765, retro_tsyr_1800, retro_tsyr_234, retro_tsyr_573, retro_tsyr_761, retro_tsyr_796, retro_tsyr_832, retro_tsyr_864, retro_tsyr_978, retro_tsyr_999,
Tursiops truncatus ENSTTRG00000009099 ortholog_one2one 3 retrogenes
retro_ttru_1451, retro_ttru_1563, retro_ttru_1629,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_496 78.50 87.60
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2. retro_ocun_697 55.70 64.46
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3. retro_ocun_1380 76.03 100.00
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Download FASTA sequences of all ENSOCUG00000016834 retrocopies