Parental gene:

ENSOCUG00000006338

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:60271241..60287374(+)


>ENSOCUG00000006338
ATGTCTACGCAAGGCGGAGGACCTAACGCCTCCGCTTGGGTCGTTGCTGCCCGGCGAGGGTCGGCTGCGCCTCGAGCTGC
GGGGCAGAGGCCGTCGGAGCAACCCGGGCGAAGAGGTCAGGGAGGTAACAGGGGCGGCAGAGGAGGTTCCTGGAGCGAGC
CCTCCGGACGCGACATCGTGGTCGGTAGTCGCAGGGAATCGCCTCTCTGTTTCGACTTGAAGAGCGAGTTGGTCGGCGCA
GTCATCGGTCGTGGTGGATCAAAAATAAAAGAGATACAAAGTAGAACAAACACTAAAATACAGATAATAAAAGGAACACC
TAACTCGGAAGTAAAAATTTTTGGCAGCAAGACGATGCAGACAAAAGCAAAAGCGGTAATAGATGACTTTGTTAAAAAAC
AAGAAAATTACAATCTGAGTCGCAAAAGTGATATTGAGGCCTTCCAACCCTCTGGAAGAGAGGTAAGCACAGATGCCAAT
GGTGTTAAAGATCGGCCGTTGATAGACTGGGATCAAATTCGAGAGGAGGCTGTGAGATGGGAGAAAAAGAAGTGGGAAGA
TTTACTTCCGATTAAGAAAAACTTTTATGTAGAATCCGAAAAAACAAGATCGATGACACAAGAAGAGATAGACACATGGA
GGAAGGAAAATTTTAATGTAATGTGCGATGATCTGAAAGAAGGTGAAAAACGTCCTGTACCGAATCCTACCTGTTCATTT
GAAGATGCCTTTGAAACTTTTCCTGAAGTAATGAAAAATATTGAAAAGGCAGGTTTTAAAAAGCCAACGCCAATTCAGTC
TCAAACGTGGCCGATAGTTCTACAAGGAATAGATGTGATAGGAGTAGCCCAAACGGGAACCGGGAAAACACTGTCATATT
TGATGCCTGGATTTATTCATCTAGACTGTCAACCAGTTGGCAGGGAGAAAAGGAATGGCCCCGGCATGTTAGTCCTTACA
CCCACTCGGGAGTTGGCTCTGCAGGTGCAGGCCGAATGTTCTAAGTATTCATACAAAAATCTTAGAAGTGTTTGTATATA
TGGTGGTGGAGATCGAGAAGCACAAATACAAGATGTTTCAAAAGGTGTCGACATCGTAATCGCAACCCCTGGAAGGTTAA
ATGATCTACAGATGAATAACTTCATTAGACTCAAGAGTGTCACCTACTTGGTTTTAGATGAAGCTGATAAAATGTTGGAT
ATGGGATTTGAACCCCAGATAATGAAGATTTTATTAGACGTTCGACCAGATAGGCAAACAATTATGACAAGTGCAACCTG
GCCCTATGGTGTGCGTAGGCTTGCACAGTCATACTTGAAAGAACCAATGCTTGTGTATGTTGGAACTTTGGATCTAGTGG
CTGTAAGTACAGTAAAACAAAATATAATCATTACCACAGAAGAAGAGAAACGAATACATATACAAAAATTCCTGGAAAAT
ATGTCACCGAAGGACAAAGTCATAGTATTTGTTAGTAGAAAAATTGTGGCTGATCATTTGTCAAGTGACCTAGTCCTCCA
ACATTTATCAGTAGAGTCGCTGCATGGCAATAGAGAACAAAGTGATCGGGAGAAAGCGTTAAAGAACTTTAAAACAGGTA
AAGTGAGGATATTAATTGCTACTGATTTAGCATCACGTGGATTGGATGTCCATGATATCACTCATGTCTATAATTACGAC
TTTCCGAGGAATATTGAAGAATATGTACACAGAGTAGGACGTACTGGAAGAGCAGGAAACACAGGGGTATCAATCACCCT
CATCACGAGAAATGATTGGAGGGTTGCTGCTGAACTGATTCATATCCTGGAAAGAGCAAATCAGAATATCCCAGAGGAGC
TTGTTGCAATGGCTGAGAGATACAATGCAAGCAAGTTGAAAAGAGAAATGGAAAAAAAAATGGGACGACCTCAAGCCAAA
CCCAAAAAGTTTTATTAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .00 RPM
SRP017611_kidney 0 .51 RPM
SRP017611_liver 0 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007851 ortholog_one2many 1 retrogene
retro_amel_31,
Callithrix jacchus ENSCJAG00000009966 ortholog_one2many 2 retrogenes
retro_cjac_3639, retro_cjac_3640,
Equus caballus ENSECAG00000017971 ortholog_one2many 1 retrogene
retro_ecab_7,
Felis catus ENSFCAG00000031631 ortholog_one2many 1 retrogene
retro_fcat_583,
Homo sapiens ENSG00000080007 ortholog_one2many 1 retrogene
retro_hsap_76,
Gorilla gorilla ENSGGOG00000016092 ortholog_one2many 1 retrogene
retro_ggor_2889,
Microcebus murinus ENSMICG00000017145 ortholog_one2many 1 retrogene
retro_mmur_1603,
Monodelphis domestica ENSMODG00000018546 ortholog_many2many 1 retrogene
retro_mdom_14,
Mustela putorius furo ENSMPUG00000004342 ortholog_one2many 1 retrogene
retro_mputfur_47,
Nomascus leucogenys ENSNLEG00000001209 ortholog_one2many 1 retrogene
retro_nleu_1094,
Otolemur garnettii ENSOGAG00000013660 ortholog_one2many 1 retrogene
retro_ogar_227,
Procavia capensis ENSPCAG00000005962 ortholog_one2many 1 retrogene
retro_pcap_151,
Pongo abelii ENSPPYG00000016774 ortholog_one2many 1 retrogene
retro_pabe_39,
Pan troglodytes ENSPTRG00000018344 ortholog_one2many 1 retrogene
retro_ptro_35,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_227 66.14 98.14
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2. retro_ocun_1061 75.80 67.29
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Download FASTA sequences of all ENSOCUG00000006338 retrocopies