Parental gene:

ENSOCUG00000005941

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:15:44161097..44267983(+)


>ENSOCUG00000005941
ATGCGCGCGCTGCTGGCGCTGCTGCGCACGGGCCGGGGGTGGCGCGCGGGCAGCCCCGTCGCCGCCCACCCGCCGGCGGG
AGCGAGGGCAAGGAGCGGGCCGCTGCGCGCCATGGCCCTGTACCACACGGAGGAGCGCGGCCGGCCCCACTCGGAGGACT
ACCGCCTCTTCTTCAAGAATGTAGCTGGCCACTACATTTCTCCCTTTCATGATATTCCTCTGAAAGTGGAGTCTAAAGAG
GAAAATGGCATTCCTACAAAGAAAGCACGAAATGATGAATATGAGAATTTGTTTAACATGGTTGTAGAAGTACCTCGGTG
GACAAATGCTAAAATGGAGATTGCCACCAAGGAGCCATTGAATCCCATTAAACAAGATGTAAAGCATGGCAAGCTGCGCT
ATGTGGCAAATATCTTCCCTCACAAGGGTTATATATGGAATTATGGTGCTCTCCCTCAGACTTGGGAAGATCCCCATCAA
ACAGATGAGAGCACAAACTGCTGTGGAGATAATGATCCTATTGATGTTTGTGAAATAGGCTCAAAGGTTCTTACTCGTGG
AGAGGTTGTTCATGTGAAGATTCTTGGAATTTTGGCTCTGATTGATGAGGGTGAAACGGATTGGAAATTAATTGCTATCA
ATGCTAATGATCCTGAAGCCTCAAAGTTTGATGATATTGATGATGTTAAGAAGTTCAAACCTGGATACCTGGAAGCTACT
CTTAACTGGTTTAAGTTTTATAAAGTACCAGATGGAAAACCAGAAAACCAGTTTGCTTTTAATGGAGAATTCAGAAACAA
GGCTTTTGCTCTTGAAGTTATTAAGTCTACTCATGATCACTGGAAGGCATTGCTCATGAAGAAATGTGATGGAGGGGCAA
TAAATTGCACAAACGTGCAGGTGTGTGATAGCCCTTTCCTTTGCACTCAAGAGGAAGCAAGATCATTCGTTGAATCGAAA
TTGTCATCTTCACAGAACAATGAAAATGATGAAGAAGAGCAAATATGGCACTTCCTTGGCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 19 .48 RPM
SRP017611_kidney 50 .68 RPM
SRP017611_liver 4 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010887 ortholog_one2many 1 retrogene
retro_cfam_405,
Choloepus hoffmanni ENSCHOG00000008731 ortholog_one2many 3 retrogenes
retro_chof_1052, retro_chof_430, retro_chof_769,
Echinops telfairi ENSETEG00000014816 ortholog_one2many 1 retrogene
retro_etel_1959,
Macaca mulatta ENSMMUG00000017004 ortholog_one2many 1 retrogene
retro_mmul_1278,
Monodelphis domestica ENSMODG00000020635 ortholog_one2many 5 retrogenes
retro_mdom_638, retro_mdom_795, retro_mdom_945, retro_mdom_946, retro_mdom_947,
Oryctolagus cuniculus ENSOCUG00000016001 within_species_paralog 2 retrogenes
retro_ocun_1373, retro_ocun_883,
Ochotona princeps ENSOPRG00000007086 ortholog_one2many 1 retrogene
retro_opri_847,
Sus scrofa ENSSSCG00000022365 ortholog_one2many 1 retrogene
retro_sscr_557,
Tursiops truncatus ENSTTRG00000003141 ortholog_one2many 2 retrogenes
retro_ttru_1307, retro_ttru_606,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1338 71.13 82.11
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2. retro_ocun_1470 67.06 73.31
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Download FASTA sequences of all ENSOCUG00000005941 retrocopies