Parental gene:

Rpl10a, ENSMUSG00000037805

Aliases:Rpl10a, CsA-19, Nedd6
Description:ribosomal protein L10A [Source:MGI Symbol;Acc:MGI:1343877]
Organism:Mouse (Mus musculus)
Coordinates:17:28328470..28331032(+)


>ENSMUSG00000037805
ATGAGCAGCAAAGTCTCACGCGACACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGCAA
GTTTCTGGAGACGGTGGAGCTGCAGATCAGCCTGAAGAACTACGACCCTCAGAAGGACAAACGTTTCTCGGGCACCGTCA
GGCTCAAGTCCACCCCACGCCCCAAGTTCTCGGTGTGCGTTCTGGGGGACCAGCAGCACTGTGATGAAGCCAAGGCCGTG
GATATCCCCCACATGGACATCGAGGCGCTCAAGAAGCTTAACAAAAACAAGAAGTTGGTCAAGAAGCTGGCTAAGAAGTA
CGATGCCTTTTTGGCCTCTGAGTCTCTGATTAAGCAGATCCCACGTATCCTGGGCCCAGGCCTAAACAAGGCTGGCAAGT
TCCCCTCCCTGCTGACACACAATGAAAACATGGTGGCCAAAGTGGATGAGGTGAAATCGACAATCAAGTTCCAGATGAAG
AAGGTGCTGTGTTTGGCCGTCGCTGTTGGCCACGTGAAGATGACCGATGATGAGCTAGTCTACAACATTCATCTGGCTGT
CAATTTCTTGGTGTCCTTGCTTAAGAAAAACTGGCAAAACGTGCGGGCTCTGTACATCAAGAGCACCATGGGCAAGCCCC
AGCGTCTGTATTAG

Library Parental gene expression (RPM)
SRP007412_brain 27 .90 RPM
SRP007412_cerebellum 18 .45 RPM
SRP007412_heart 34 .83 RPM
SRP007412_kidney 40 .04 RPM
SRP007412_liver 39 .90 RPM
SRP007412_testis 16 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019494 ortholog_one2one 4 retrogenes
retro_btau_138, retro_btau_1501, retro_btau_1634, retro_btau_87,
Dasypus novemcinctus ENSDNOG00000012921 ortholog_one2one 3 retrogenes
retro_dnov_157, retro_dnov_1917, retro_dnov_469,
Equus caballus ENSECAG00000014090 possible_ortholog 2 retrogenes
retro_ecab_512, retro_ecab_517,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Microcebus murinus ENSMICG00000012458 possible_ortholog 3 retrogenes
retro_mmur_1381, retro_mmur_384, retro_mmur_93,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Pongo abelii ENSPPYG00000016529 possible_ortholog 10 retrogenes
retro_pabe_1208, retro_pabe_1597, retro_pabe_2614, retro_pabe_2759, retro_pabe_3302, retro_pabe_3315, retro_pabe_3377, retro_pabe_357, retro_pabe_451, retro_pabe_475,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Sus scrofa ENSSSCG00000001543 possible_ortholog 7 retrogenes
retro_sscr_1169, retro_sscr_1174, retro_sscr_120, retro_sscr_246, retro_sscr_379, retro_sscr_461, retro_sscr_465,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_149 88.48 100.00
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2. retro_mmus_452 100.00 100.00
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3. retro_mmus_1110 85.00 55.30
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4. retro_mmus_1304 71.23 99.08
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5. retro_mmus_1422 86.76 100.00
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6. retro_mmus_1737 87.69 88.94
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7. retro_mmus_2038 90.91 65.90
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8. retro_mmus_2652 83.05 53.00
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Download FASTA sequences of all ENSMUSG00000037805 retrocopies