Parental gene: | Usp1, ENSMUSG00000028560 |
| Aliases: | None |
| Description: | ubiquitin specific peptidase 1 [Source:MGI Symbol;Acc:MGI:2385198] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 4:98923809..98935543(+) |
>ENSMUSG00000028560
ATGCCTGGCGTCATACCTAGTGAAAGTAATGGGCTTTCAAGAGGCAGTCCATCCAAGAAAAACAGACTGTCTCTGAAGTT
TTTTCAGAAAAAGGAAACTAAAAGAGCCTTAGACTTTACTGATTCTCAAGAAAATGAAGAAAAAACTTCTGAATATAGAG
GATCTGAGATTGACCAAGTTGTTCCTGCTGCACAGTCCTCCCCAGTAAGCTGCGAGAAGAGAGAGAACTTGTTACCATTT
GTGGGATTGAATAACCTTGGCAACACTTGTTATCTGAATAGTATTCTTCAGGTGTTATACTTTTGTCCTGGCTTTAAGAC
TGGAGTGAAGCACTTATTTAATATTATTTCAAGGAAGAAAGAAGCTCTGAAGGATGACTCTAATCAGAAGGATAAGGGAA
GCTGCAAAGAAGAGTCTTTGGCAAGTTATGAGCTTATATGTAGTTTACAGTCCTTAATAATTTCAGTTGAACAGCTTCAG
GCTAGTTTTCTCTTAAATCCAGAGAAATATACAGATGAACTTGCTACACAGCCAAGGCGACTGCTGAACACACTCAGGGA
ACTCAACCCTATGTATGAAGGATTTCTACAGCATGATGCACAGGAAGTGCTACAGTGTATTCTGGGAAACATTCAAGAAA
CATGCCAACTCCTAAAAAAAGAAGAAATAAAAAACCTGGCTGAATTATCCGGCAAGGTTGAAGAACAATCTCTTCAGAAA
GAGGAAACAGGTGGAATTACCAGCACAGAGATTGACAGTATGAGGAATACGGAGGACGTCAAAGAGCAGCTCCCCAAAGG
GAACTGGAAAAGAAAAAGTGACAGTGAGTCGAGTAACGTGAAGAAAAAGGTTAAACTGTCCAGGGAATCCCAGCCATTGG
AAGAAAACCAGAGACAAACCAGATCCAAGAGAAAAGCTATCGGAGACACACTAGAGGCTGCTCCTAAGATCATCCCCAAG
TGTGTTTCTGAAAGTGAGAGTGCAAAGCCCTCACAGAAGAAATCAAAAGTTAAAATAAATTGGTTAAAGCCATCCACTAA
GCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGGACAACCTAAGGAAA
AGGAGGGTGATGTTGAAGAGGACTTGGAGAAGTACGGAAGTGACCACACAGCTAATGGTGGACCCGAATCTCCAGGAAGT
AGCGTCACACCTGTGGACAGCAGTGAAGCCAAGTCCGGAAACAAAGGTGCTGAACAGATTGGCTTTGAGCTAGTAGAGAA
ACTGTTTCAAGGTCAGCTCGTGTTAAGGACTCGGTGTTTGGAATGTGAAAGCTTAACAGAAAGAAGAGAAGATTTCCAGG
ATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAAATTTCTCCAGAGCCAAAAACAGAA
ATGAAGACCTTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGAATTGTAGGAGAGGATAAATACTTCTGTGAAAA
TTGCCATCATTATACGGAAGCAGAGCGAAGTCTCCTGTTTGATAAAATGCCTGAAGTTATCACTATTCATCTGAAGTGCT
TTGCTGCTAGTGGCTTGGAGTTTGACTGTTACGGTGGTGGACTTTCCAAGATCAACACTCCTTTATTGACACCTCTTAAA
CTGTCACTAGAAGAATGGAGCACAAAGCCGACGAATGACAGCTATGGATTATTTGCCGTTGTGATGCACAGTGGCATTAC
TATTAGTAGTGGGCACTATACCGCATCTGTTAAAGTCACTGACCTTAACAGTCTAGAGCTCGATGAGGGGAATTTTGTGG
TTGACCAGATGTGTGAACTAGGTAAGCCAGAGCCACTGACCGAGGAGCAAGCAAGGGGGACGGCTGGGAACTACGACGAT
GAAGTATCAATTAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTTTTGAACAAAAAAAATGTAGAAGGTATTGGACTTCT
CGGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGATAAGGTGGTTGGGACACCATTCA
CCGACAATAGAAATTCTGAAACTAATGATACTACTAATGGGACCCACGAATCTGACAGGAACAAGGAATCCAGTGACCAA
ACAGGCGTTAACATGAACGGACTTGAGAACAAAATTTCCTATGTAGTGCAAAGCTTAAAGGAGTACGAGGGGAAGTGGTT
GCTCTTTGACGATTCTGAGGTAAAAGTGACAGAAGAGAAAGACTTTCTGAATTCTCTCTCCCCTTCTACATCCCCTACGT
CTACTCCCTACTTGCTATTCTATAAAAAATTATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 16 .35 RPM |
| SRP007412_cerebellum | 16 .20 RPM |
| SRP007412_heart | 10 .27 RPM |
| SRP007412_kidney | 16 .44 RPM |
| SRP007412_liver | 14 .12 RPM |
| SRP007412_testis | 261 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000012439 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000054814 | within_species_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009357 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013871 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_2136 | 94.44 | 93.88 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSMUSG00000028560 retrocopies