Parental gene:

PEF1, ENSMODG00000017573

Aliases:None
Description:penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009]
Organism:Opossum (Monodelphis domestica)
Coordinates:4:424889437..424899144(-)


>ENSMODG00000017573
TATCTTTCTTACTTTCCACAGGGCTACCCAGGAGCTGCTGGACAGGCCCCAGGAGCCCCACCAGGCAGTTATTACCCAGG
ACATCCCCAGTATGGAGGTGGGCTGCCCCCTGGGGGGGGTTATGGAGGCCCAGCTCCTGGAGGGCCTTATGGACCACCAT
CTGGTGGAGGGGCCTATGGACATCCCAGCCCAGGGGGGCTCCCCTCAGTAGCTCCTGGAGGACCATATGGAGGCTCTGCG
CCAGGAGGTCCCTATGGCCAGCCTGCTACAAATCCCTATAATACCCCTCAGCCAGGACCTTATGGGCAAGGCCCATCAGT
AGGTGGCATTCCTCCTGGTGTTGACCCTGAAGCATACTCCTGGTTCCATTCAGTGGATTCAGATCACAGTGGCTACATCT
CTGTGAAGGAGCTTAAGCAAGCCTTGGTCAACTCCAATTGGTCCACATTCAACGATGAGACCTGCTTAATGATGATAAAT
ATGTTTGACAAGACCAAAGCAGGCCGTATTGACCTCTATGGCTTCTCTGCCTTGTGGACTTTCATTCAGCAGTGGAAGAA
CCTTTTCCAGCAGTATGACCGGGACCACTCAGGATCCATCAATTACAATGAGCTGAAACAAGCTTTGTCTCAGATGGGTT
ACAACCTGAGTCCCCAGTTCATGAAGCTTCTGCTCTCCCGATACTGCCCTCGTTCTTCCAACCCTTCCATGCAGCTGGAC
CGTTTCATCCAAGTATGCACCCAGTTGCAGGTGCTGACAGAGGCCTTTCGGGAGAAAGACACGAGCATGCAGGGTAACGT
CCGGCTCAGCTTTGAGGAGTTCCTCATCATGACAGCCTCACGGATGTTGTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006355 ortholog_one2one 1 retrogene
retro_cjac_1745,
Homo sapiens ENSG00000162517 ortholog_one2one 1 retrogene
retro_hsap_497,
Gorilla gorilla ENSGGOG00000015897 ortholog_one2one 1 retrogene
retro_ggor_464,
Macropus eugenii ENSMEUG00000014458 ortholog_one2one 1 retrogene
retro_meug_375,
Microcebus murinus ENSMICG00000001374 ortholog_one2one 1 retrogene
retro_mmur_937,
Macaca mulatta ENSMMUG00000023397 ortholog_one2many 1 retrogene
retro_mmul_146,
Monodelphis domestica ENSMODG00000010355 within_species_paralog 1 retrogene
retro_mdom_782,
Nomascus leucogenys ENSNLEG00000001979 ortholog_one2one 1 retrogene
retro_nleu_2422,
Oryctolagus cuniculus ENSOCUG00000005744 ortholog_one2one 1 retrogene
retro_ocun_461,
Pongo abelii ENSPPYG00000001611 ortholog_one2one 1 retrogene
retro_pabe_238,
Pan troglodytes ENSPTRG00000000463 ortholog_one2one 1 retrogene
retro_ptro_375,
Rattus norvegicus ENSRNOG00000013972 ortholog_one2one 2 retrogenes
retro_rnor_1563, retro_rnor_2505,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1930 72.11 51.24
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Download FASTA sequences of all ENSMODG00000017573 retrocopies