Parental gene:

HSPE1, ENSG00000115541

Aliases:HSPE1, CPN10, EPF, GROES, HSP10
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Human (Homo sapiens)
Coordinates:2:198364717..198368181(+)


>ENSG00000115541
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA

Library Parental gene expression (RPM)
bodymap2_adipose 21 .55 RPM
bodymap2_adrenal 44 .48 RPM
bodymap2_brain 61 .79 RPM
bodymap2_breast 45 .72 RPM
bodymap2_colon 87 .78 RPM
bodymap2_heart 19 .22 RPM
bodymap2_kidney 94 .55 RPM
bodymap2_liver 89 .42 RPM
bodymap2_lung 41 .81 RPM
bodymap2_lymph_node 56 .39 RPM
bodymap2_ovary 72 .73 RPM
bodymap2_prostate 32 .84 RPM
bodymap2_skeletal_muscle 12 .90 RPM
bodymap2_testis 56 .35 RPM
bodymap2_thyroid 105 .98 RPM
bodymap2_white_blood_cells 13 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004008 ortholog_one2many 1 retrogene
retro_cjac_254,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Procavia capensis ENSPCAG00000009541 ortholog_one2one 1 retrogene
retro_pcap_330,
Sus scrofa ENSSSCG00000016078 ortholog_one2one 7 retrogenes
retro_sscr_103, retro_sscr_1059, retro_sscr_106, retro_sscr_1088, retro_sscr_294, retro_sscr_298, retro_sscr_401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_366 91.67 82.35
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2. retro_hsap_495 90.91 97.06
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3. retro_hsap_963 84.31 100.00
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4. retro_hsap_1066 70.83 92.16
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5. retro_hsap_1152 90.29 100.00
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6. retro_hsap_1351 93.14 100.00
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7. retro_hsap_1524 90.20 100.00
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8. retro_hsap_1646 95.15 100.00
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9. retro_hsap_1703 93.62 92.16
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10. retro_hsap_2248 65.71 100.00
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11. retro_hsap_2402 87.50 94.12
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12. retro_hsap_2480 76.09 89.22
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13. retro_hsap_2812 64.18 61.76
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14. retro_hsap_2813 73.20 92.16
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15. retro_hsap_3455 80.58 100.00
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16. retro_hsap_3540 58.00 96.08
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17. retro_hsap_3664 71.84 100.00
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18. retro_hsap_4194 75.28 86.27
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Download FASTA sequences of all ENSG00000115541 retrocopies