Parental gene:

SSR1, ENSECAG00000019520

Aliases:None
Description:signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323]
Organism:Horse (Equus caballus)
Coordinates:20:7426993..7449628(-)


>ENSECAG00000019520
GGTTCGGTAGCAGTGGCTCAAGATCTTACAGAAGATGAGGAAACAGTGGAAGATTCAATAATTGAAGATGAGGATGATGA
AGCAGAGGTGGAAGAAGATGAACCCACAGATTTGGCAGAAGATAAAGAGGAAGAAGATGTATCTGGTGAACCTGAAGCTT
CACCAAGTGCAGATACAACTATCCTGTTTGTGAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGC
TTTACAAACAAGGGTACAGAAGATTTTATTGTTGAATCCCTAGATGCCTCATTCCGTTATCCTCAGGACTACCAGTTTTA
TATCCAGAATTTCACAGCTCTTCCTCTGAACACTGTAGTGCCTCCCCAGAGGCAGGCAACTTTCGAGTACTCCTTCATTC
CTGCAGAGCCCATGGGTGGACGACCCTTTGGTCTAGTCATCAATCTGAACTACAAAGATTTGAATGGCAATGTATTCCAA
GATGCTGTCTTCAATCAAACAGTTACAATTATTGAAAGAGAGGATGGGTTAGATGGAGAAACAATCTTTATGTATATGTT
CCTTGCTGGTCTTGGGCTCTTGGTGGTTGTTGGCCTTCATCAACTCCTAGAATCTAGAAAGCGCAAGAGACCCATACAGA
AAGTAGAGATGGGTACAGCAAGTCAGAATGATGTTGATATGAGTTGGATTCCTCAGGAAACTTTGAATCAGATCAATAAA
GCTTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGCGATCAGTGGGATCTGATGAGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 60 .56 RPM
SRP021940_cerebellum 11 .74 RPM
SRP021940_embryo 39 .87 RPM
SRP021940_placental_villous 47 .68 RPM
SRP021940_synovial_membrane 34 .26 RPM
SRP021940_testis 19 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000022731 ortholog_one2one 1 retrogene
retro_btau_1285,
Dasypus novemcinctus ENSDNOG00000015772 ortholog_one2one 1 retrogene
retro_dnov_879,
Echinops telfairi ENSETEG00000020111 ortholog_one2one 1 retrogene
retro_etel_1983,
Oryctolagus cuniculus ENSOCUG00000009083 ortholog_one2one 1 retrogene
retro_ocun_1388,
Otolemur garnettii ENSOGAG00000014234 ortholog_one2one 1 retrogene
retro_ogar_1465,
Ictidomys tridecemlineatus ENSSTOG00000022608 ortholog_one2one 1 retrogene
retro_itri_1850,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_399 62.72 63.46
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Download FASTA sequences of all ENSECAG00000019520 retrocopies