Parental gene:

PSMA5, ENSECAG00000011835

Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534]
Organism:Horse (Equus caballus)
Coordinates:5:58682291..58705316(+)


>ENSECAG00000011835
ATGTTCCTCACCCGGTCTGAGTACGACAGGGGTGTGAATACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGGAATATGC
CATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGGGTGTGTGCCTAGCTGTGGAGAAGAGAA
TTACCTCCCCACTCATGGAGCCCAGCAGCATTGAGAAAATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTATAATGAGACAAT
GACAGTGGAGAGTGTAACCCAGGCTGTGTCCAATCTGGCTCTGCAGTTTGGAGAAGAAGATGCAGATCCAGGTGCCATGT
CTCGTCCTTTTGGAGTAGCACTGTTATTTGGAGGCGTTGATGAGAAAGGACCCCAGCTGTTTCATATGGACCCATCTGGA
ACCTTTGTACAGTGTGATGCTCGAGCAATTGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTTTACCACAA
GTCTATGACACTGAAAGAAGCCATCAAGTCTTCACTCATCATCCTCAAACAAGTAATGGAGGAGAAGCTGAATGCAACTA
ACATAGAGCTAGCCACAGTGCAGCCTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTTGAAGAGGTTATCAAGGAC
ATTTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 10 .68 RPM
SRP021940_cerebellum 20 .67 RPM
SRP021940_embryo 28 .10 RPM
SRP021940_placental_villous 28 .82 RPM
SRP021940_synovial_membrane 18 .50 RPM
SRP021940_testis 34 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013670 ortholog_one2one 1 retrogene
retro_cpor_1063,
Echinops telfairi ENSETEG00000012916 ortholog_one2one 1 retrogene
retro_etel_1053,
Mus musculus ENSMUSG00000068749 ortholog_one2many 1 retrogene
retro_mmus_52,
Ochotona princeps ENSOPRG00000008863 ortholog_one2one 1 retrogene
retro_opri_449,
Rattus norvegicus ENSRNOG00000019868 ortholog_one2one 2 retrogenes
retro_rnor_1230, retro_rnor_658,
Sus scrofa ENSSSCG00000006830 ortholog_one2one 2 retrogenes
retro_sscr_1156, retro_sscr_1194,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1106 50.41 50.21
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Download FASTA sequences of all ENSECAG00000011835 retrocopies