Parental gene:

PITPNB, ENSCPOG00000012298

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:15208446..15263643(+)


>ENSCPOG00000012298
CCACTTTATGTGAAATACATCCGTGTGGTTTTGCCGTGTTCTGTTCAGGAGTATCAGGTCGGACAACTTTACTCTGTCGC
AGAGGCTAGTAAGAATGAGACTGGTGGTGGTGAAGGAATTGAAGTCCTGAAGAACGAGCCTTATGAGAAGGATGGAGAAA
AGGGACAATTTACACACAAAATTTACCACCTAAAGAGCAAAGTCCCTACATTCGTGAGGATGATTGCTCCCGAGGGCTCC
TTGGTGTTTCATGAGAAGGCCTGGAACTCGTACCCCTACTGTCGAACAATTGTAACGAATGAATATATGAAAGATGACTT
CTTCATTAAAATTGAAACGTGGCACAAACCGGACTTGGGAACATTAGAAAATGTCCATGATTTGGATCCAAACACATGGA
AAACTGTTGAAGTAGTCCACATAGATATTGCAGATCGAAGTCAAGTTGAACCTGGAGACTACAAAGCTAATGAAGACCCA
GCATTATACCAGTCAGTCAAGACTAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAACCCTGACTG
TCCTCAAATGTGTGCTTATAAACTGGTGACCATCAAATTCAAGTGGTGGGGGCTACAAAATAAAGTAGAAAACTTCATCC
AAAAGCAAGAAAAAAGGATATTTACAAACTTTCATCGCCAGCTCTTTTGTTGGATTGACAAGTGGATTGATCTGACGATG
GAAGACATTAGGAGAATGGAAGATGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAAGGGTTCCGTCCGAGGCACTTC
GGCTGCTGATGCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 25 .59 RPM
SRP017611_kidney 17 .90 RPM
SRP017611_liver 22 .46 RPM
SRP040447_lung 17 .63 RPM
SRP040447_skeletal_muscle 5 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012309 ortholog_one2one 2 retrogenes
retro_chof_2374, retro_chof_860,
Macropus eugenii ENSMEUG00000010442 ortholog_one2one 3 retrogenes
retro_meug_392, retro_meug_689, retro_meug_786,
Oryctolagus cuniculus ENSOCUG00000000511 ortholog_one2one 1 retrogene
retro_ocun_1620,
Otolemur garnettii ENSOGAG00000000391 ortholog_one2one 1 retrogene
retro_ogar_1300,
Ochotona princeps ENSOPRG00000002540 ortholog_one2one 1 retrogene
retro_opri_931,
Tupaia belangeri ENSTBEG00000000293 ortholog_one2one 1 retrogene
retro_tbel_4285,
Takifugu rubripes ENSTRUG00000018546 ortholog_one2many 1 retrogene
retro_trub_36,
Tarsius syrichta ENSTSYG00000001148 ortholog_one2one 1 retrogene
retro_tsyr_503,
Tursiops truncatus ENSTTRG00000001278 ortholog_one2one 2 retrogenes
retro_ttru_1060, retro_ttru_1439,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_957 71.04 81.55
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Download FASTA sequences of all ENSCPOG00000012298 retrocopies