Parental gene:

RAB5C, ENSCPOG00000011190

Aliases:None
Description:RAB5C, member RAS oncogene family [Source:HGNC Symbol;Acc:9785]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_53:12074467..12076473(-)


>ENSCPOG00000011190
ATGGCGGGTCGGGGAGGCGCAGCTCGCCCCAACGGACCAGCCTCGGGGAACAAGATCTGCCAGTTCAAGCTGGTCCTGCT
GGGGGAGTCGGCAGTGGGCAAGTCCAGCCTCGTGCTCCGCTTTGTCAAGGGCCAGTTCCACGAGTACCAGGAGAGCACCA
TTGGAGCGGCCTTCCTCACACAGACGGTCTGCCTGGACGACACAACGGTCAAGTTTGAGATCTGGGACACAGCTGGCCAG
GAGCGGTACCACAGCCTGGCGCCCATGTACTACCGCGGCGCACAGGCAGCCATCGTGGTCTACGACATCACCAACACGGA
CACTTTCTTGCGGGCCAAGAACTGGGTGAAGGAGCTGCAGCGGCAGGCCAGCCCCAACATCGTCATAGCGCTGGCGGGGA
ACAAGGCCGACCTGGCCAGCAAGCGGGCCGTGGAGTTCCAGGATGCCCAGGCCTACGCTGAGGACAACAGCCTGCTGTTC
ATGGAGACATCTGCCAAGACTGCCATGAACGTCAACGAGGTCTTCATGGCCATCGCCAAGAAGCTGCCCAAGAATGAGCC
CCAGAACGTAGCAGGTGCGCCAGGCCGGAACCGAGGTGTTGACCTGCAGGAGAGCAGCCCAGCCAGCCGGGGCCAGTGCT
GCAGCAACTGA

Library Parental gene expression (RPM)
SRP017611_brain 44 .17 RPM
SRP017611_kidney 87 .62 RPM
SRP017611_liver 44 .62 RPM
SRP040447_lung 139 .67 RPM
SRP040447_skeletal_muscle 23 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000472 possible_ortholog 2 retrogenes
retro_cjac_189, retro_cjac_1948,
Cavia porcellus ENSCPOG00000005322 within_species_paralog 2 retrogenes
retro_cpor_1213, retro_cpor_219,
Macropus eugenii ENSMEUG00000005614 ortholog_one2one 1 retrogene
retro_meug_2118,
Monodelphis domestica ENSMODG00000014792 ortholog_one2one 1 retrogene
retro_mdom_1399,
Pongo abelii ENSPPYG00000008398 possible_ortholog 1 retrogene
retro_pabe_2664,
Rattus norvegicus ENSRNOG00000018568 possible_ortholog 2 retrogenes
retro_rnor_393, retro_rnor_73,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_333 57.99 77.31
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2. retro_cpor_473 61.64 73.15
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Download FASTA sequences of all ENSCPOG00000011190 retrocopies