Parental gene:

NDUFV2, ENSCPOG00000008479

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_82:2579304..2602204(-)


>ENSCPOG00000008479
GCCATGTTCTCCTTGGCACTGCGGGCCCGGACGGCCGGCCTCACCGCCGCGTGGGGAAGACAAATAAGGAATTTGCATAA
GACAGCTGTGCAAAATGGTGCTGGAGGAGCCTTATTTGTGCACAGAGATACTCCTGAGAATAATCCAGACACTCCATTTG
ATTTCACACCAGAAAACTATAAGAGGATAGAGGCAATTATAAAAAACTACCCCGAAGGGCATAAAGCAGCTGCAGTGCTT
CCAGTCCTGGACTTAGCCCAAAGGCAGAATGGGTGGTTGCCCATCTCTGCTATGAACAAGGTTGCAGAAGTTTTACAAGT
TCCTCCAATGAGAGTTTATGAAGTAGCAACTTTCTATACAATGTACAACCGAAAGCCAGTGGGGAAGTACCATATTCAGG
TCTGCACCACCACACCCTGCATGCTGCGAGACTCTGACAGCATCCTGGAGGCCATTCAGAAAAAGCTTGGAATAAAGGTT
GGGGAGACTACACCTGACAAACTTTTCACTCTTATAGAAGTGGAATGTTTAGGTGCCTGTGTAAATGCACCAATGGTTCA
AATAAATGACAACTACTATGAGGATCTGACACCTAAGGATATTGAAGAAATTATTGATGAGCTGAAAGCTGGGAAAATTC
CAAAACCTGGGCCAAGGAGTGGACGTTTCTGTTGTGAGCCAGCTGGAGGTCTCACCTCGTTGACTACACCACCTAAAGGA
CCTGGGTTTGGTGTACAAGCAGGCCTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 46 .19 RPM
SRP017611_kidney 128 .14 RPM
SRP017611_liver 57 .67 RPM
SRP040447_lung 50 .42 RPM
SRP040447_skeletal_muscle 193 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007415 ortholog_one2one 1 retrogene
retro_amel_810,
Bos taurus ENSBTAG00000004871 ortholog_one2one 2 retrogenes
retro_btau_1403, retro_btau_1831,
Choloepus hoffmanni ENSCHOG00000013714 ortholog_one2one 1 retrogene
retro_chof_1621,
Dasypus novemcinctus ENSDNOG00000017036 ortholog_one2one 1 retrogene
retro_dnov_254,
Dipodomys ordii ENSDORG00000008179 ortholog_one2one 5 retrogenes
retro_dord_161, retro_dord_233, retro_dord_327, retro_dord_503, retro_dord_750,
Erinaceus europaeus ENSEEUG00000006818 ortholog_one2one 1 retrogene
retro_eeur_286,
Homo sapiens ENSG00000178127 ortholog_one2one 1 retrogene
retro_hsap_2068,
Loxodonta africana ENSLAFG00000010520 ortholog_one2one 2 retrogenes
retro_lafr_133, retro_lafr_872,
Macaca mulatta ENSMMUG00000022095 ortholog_one2many 1 retrogene
retro_mmul_188,
Mustela putorius furo ENSMPUG00000004710 ortholog_one2one 2 retrogenes
retro_mputfur_1106, retro_mputfur_1623,
Oryctolagus cuniculus ENSOCUG00000009899 ortholog_one2one 3 retrogenes
retro_ocun_1083, retro_ocun_1381, retro_ocun_678,
Otolemur garnettii ENSOGAG00000010118 ortholog_one2one 2 retrogenes
retro_ogar_2531, retro_ogar_3030,
Ochotona princeps ENSOPRG00000012788 ortholog_one2one 2 retrogenes
retro_opri_307, retro_opri_660,
Procavia capensis ENSPCAG00000006284 ortholog_one2one 2 retrogenes
retro_pcap_109, retro_pcap_405,
Rattus norvegicus ENSRNOG00000042503 ortholog_one2one 1 retrogene
retro_rnor_2993,
Sorex araneus ENSSARG00000011876 ortholog_one2one 2 retrogenes
retro_sara_543, retro_sara_625,
Sus scrofa ENSSSCG00000003683 ortholog_one2one 1 retrogene
retro_sscr_424,
Ictidomys tridecemlineatus ENSSTOG00000016259 ortholog_one2many 1 retrogene
retro_itri_1510,
Tupaia belangeri ENSTBEG00000015426 ortholog_one2one 8 retrogenes
retro_tbel_1013, retro_tbel_1522, retro_tbel_2199, retro_tbel_2667, retro_tbel_3333, retro_tbel_3587, retro_tbel_455, retro_tbel_468,
Tursiops truncatus ENSTTRG00000002426 ortholog_one2one 3 retrogenes
retro_ttru_1543, retro_ttru_435, retro_ttru_486,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_389 78.46 50.60
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2. retro_cpor_401 78.29 50.60
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3. retro_cpor_689 53.03 51.41
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4. retro_cpor_1500 81.44 67.07
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Download FASTA sequences of all ENSCPOG00000008479 retrocopies