Parental gene:

ZSCAN4, ENSCPOG00000005419

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_175:1246764..1249143(+)


>ENSCPOG00000005419
ATGGCTTTAGATCTCAGAAAATCATTTTGCCAAGAACTCTCCTCAAATAACCTTGAATCAGAAGATCTAGAATTTTCATC
AACCCAAGGTTTTGCTGTCCCAAAGAGAGAGATCTCTGCATTCTCAAGCATTCAACTCAACTCATTGCAATACAGTGATA
ACTCAGAAGCAAGGAAGGAACTACAAAGACTGTATGAGTTTTTTCACTCATGGTTGCAGCCAGAAAATCATAGCAAGGAT
CAGATTATTGCTCAGTTAGCCATGGAGCAGTTTATGCTTAGTGGCCGCTGCAGGGACAAGTCTATATTGAAAAAGAAATG
GGAATCAAGTGGTAAAAACCTGGAGAAATTACTGGAAGACTTGACAGATGATTGTATGAAGCCACCTGTGTTAGTCCATG
TCTGCATGCAGGGACAGGAAGCACTGTTCTCTGAGGATATGCCCTTGAAAGAAGTCATTGCTCATCTCACGAAACAGTCA
TCAGCAAAAACCTTTACAGCAGGTATGGGCACAGCCCACCAGGTTTCCCAAAATGCTCCTTTGGGAACAAGACAAGGAAA
TGAACATGAAGAAGATGGCTGCACTAGTTCCTGGGAAGTAACTCAAGTAAATGACTATATTACCAATCCAGGAAAAGAAA
TAGTTTCCCTGCTCATTATTCCAGAAGCAAATGATCCTACACCTGTAGAGGAAAGTGCTTCTTGGGAGAATACACACAGC
TCCAGAAAAGCAAGGCCAGTCATATGTGGATTGCAAGAAGAGTCCCAGAAAGGACCTTCTTACCAAGATGTCCCTATGGA
TGTGGGACCAGGATCTTCCTCTCTGCCACATCAATCCTCCTCTGAGCCAGTCTCTAATCACCACTGCAGTGAAGGAAACT
CTGCCTGTGAGGAATCCCAAGAAAGATTCCATGAATCGCCCAAATCATACAAATGTGAGGAATGTCCCAAGACCTTTAAG
TATCTCTCTCATTTCCTAGCCCACCAAAGATGCCACAGAAGCTTCCGC

Library Parental gene expression (RPM)
SRP017611_brain 0 .12 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .00 RPM
SRP040447_lung 0 .10 RPM
SRP040447_skeletal_muscle 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000011483 ortholog_one2one 11 retrogenes
retro_dnov_1048, retro_dnov_1253, retro_dnov_1287, retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499, retro_dnov_2556, retro_dnov_2666, retro_dnov_859, retro_dnov_964,
Equus caballus ENSECAG00000015200 ortholog_one2many 1 retrogene
retro_ecab_78,
Loxodonta africana ENSLAFG00000003257 ortholog_one2many 1 retrogene
retro_lafr_171,
Ictidomys tridecemlineatus ENSSTOG00000023779 ortholog_one2one 1 retrogene
retro_itri_408,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_285 78.93 76.19
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2. retro_cpor_1470 58.65 100.00
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Download FASTA sequences of all ENSCPOG00000005419 retrocopies