Parental gene:

PLEKHA3, ENSCPOG00000003906

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_3:12023330..12045065(-)


>ENSCPOG00000003906
ATGGAGGGCGTTCTGTACAAGTGGACCAACTATCTCACAGGTTGGCAGCCTCGCTGGTTTGTTTTAGATAATGGAATCCT
ATCCTACTATGATTCACAGGACGATGTTTGCAAAGGGAGCAAAGGAAGCATAAAGATGGCAGTCTGTGAAATTAAAGTTC
ATTCAGCAGACAACACAAGAATGGAATTAATCATTCCAGGAGAGCAGCATTTCTACATGAAGGCAGTAAATGCAGCTGAG
AGACAGCGGTGGCTGGTTGCTCTGGGGAGCTCCAAAGCATGTTTGACTGATACTAGGACAAAAAAAGAGAAAGAAATAAA
TGAAACCAGTGAATCTCTGAAAACCAAAATGTCTGAACTTCGCCTCTACTGTGACCTCCTAATGCAGCAGGTTCATACAA
TCCAGGAATTTGTTCACCATGATGAGAATCATTCATCTCCCAGTGTAGAGAACATGAACGAAGCCTCTTCCCTACTTAGT
GCCACCTGTAATACGTTCATCACAACGCTTGAGGAGTGTGTGAAGATAGCGAATGCCAAGTTCAAGCCTGAGATGTTTCA
GCTGCCCCATCCGGATCCTTTGGTTTCTCCCGTGTCACCATCTCCTGTCCAAATGATGAAACGTTCTGTCAGTCACCCTG
GTTCTTGCAGTTCAGAGAGGAACAGCTACTCCGTGAAAGAACCAGGATCTGCACTTCACCGACTCTCCCAGCGACGCCGA
AGAACCTACTCAGATACAGACTCTTGTAATGATGTTCCCCCTGAAGACCCAGACAGACCTGTTCACTGTTCAAGAAATAC
ACTTAATGGAGATTTGGCATCAGCAACCATTCCTGAAGAAAGCAGAATTACGGCCAAAAAGAAATCGGAATTGGAAGACC
CTCTTCCATCCTTCTCTTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 17 .83 RPM
SRP017611_kidney 24 .92 RPM
SRP017611_liver 21 .55 RPM
SRP040447_lung 21 .44 RPM
SRP040447_skeletal_muscle 4 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013997 ortholog_one2one 5 retrogenes
retro_chof_1366, retro_chof_1559, retro_chof_300, retro_chof_736, retro_chof_985,
Dasypus novemcinctus ENSDNOG00000002717 ortholog_one2one 1 retrogene
retro_dnov_107,
Erinaceus europaeus ENSEEUG00000004169 ortholog_one2one 1 retrogene
retro_eeur_416,
Homo sapiens ENSG00000116095 ortholog_one2one 1 retrogene
retro_hsap_2060,
Macropus eugenii ENSMEUG00000015317 ortholog_one2one 2 retrogenes
retro_meug_1530, retro_meug_341,
Microcebus murinus ENSMICG00000009898 ortholog_one2one 1 retrogene
retro_mmur_617,
Myotis lucifugus ENSMLUG00000005823 ortholog_one2one 2 retrogenes
retro_mluc_1031, retro_mluc_689,
Oryctolagus cuniculus ENSOCUG00000005495 ortholog_one2one 1 retrogene
retro_ocun_1273,
Otolemur garnettii ENSOGAG00000002724 ortholog_one2one 1 retrogene
retro_ogar_1845,
Tupaia belangeri ENSTBEG00000007550 ortholog_one2one 3 retrogenes
retro_tbel_4186, retro_tbel_4555, retro_tbel_4723,
Tarsius syrichta ENSTSYG00000005341 ortholog_one2one 1 retrogene
retro_tsyr_869,
Tursiops truncatus ENSTTRG00000009729 ortholog_one2one 2 retrogenes
retro_ttru_1296, retro_ttru_1497,
Vicugna pacos ENSVPAG00000003490 ortholog_one2one 3 retrogenes
retro_vpac_487, retro_vpac_578, retro_vpac_619,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_487 62.96 61.33
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Download FASTA sequences of all ENSCPOG00000003906 retrocopies