Parental gene:

PCBP3, ENSCPOG00000003648

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_110:3897196..3929027(-)


>ENSCPOG00000003648
ATGGAGTCCAAGGTCTCAGAAGGCGGCCTGAATGTGACCCTGACCATCCGCCTACTGATGCATGGAAAGGAAGTCGGCAG
CATCATTGGGAAGAAAGGAGAGACTGTGAAGAAGATGCGTGAGGAGAGTGGTGCCAGGATCAACATCTCAGAGGGAAACT
GTCCAGAGAGAATTGTGACCATCACAGGCCCAACAGATGCCATCTTCAAGGCCTTTGCCATGATTGCCTACAAGTTTGAA
GAGGACATCATTAACTCCATGAGTAACAGCCCTGCCACCAGCAAACCCCCGGTAACACTGAGGCTCGTGGTTCCAGCCAG
CCAGTGTGGGTCCCTGATCGGCAAAGGTGGATCCAAGATCAAGGAGATCAGGGAGTCCACAGGTGCCCAGGTCCAGGTGG
CAGGGGACATGCTGCCCAACTCCACAGAGCGGGCAGTGACCATCTCAGGGACCCCGGATGCCATCATCCAGTGCGTCAAG
CAGATCTGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCTGT
CATTTTTGCAGGTGGTCAGGCCTACACGATCCAGGGACAGTACGCCATCCCCCACCCGGATCAGTTGACCAAGCTCCACC
AGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCAACCCCGCTTTCCCCGGAGAAAAGCTGCCTTTACAC
TCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGTCGTCAGGTCTGGATGCCAGCCCCCCGGCCAGTACTCACGAGCTCAC
CATTCCCAATGATCTAATAGGCTGCATAATTGGACGCCAGGGGACCAAAATCAATGAAATCCGTCAGATGTCTGGGGCTC
AGATCAAAATTGCCAATGCCACTGAAGGGTCATCAGAGCGTCAAATCACCATTACGGGGACCCCGGCCAACATTAGCCTT
GCCCAGTATCTCATCAACGCCAGGCTGACGTCCGAGGTCACCGGGATGGGTGCGCTC

Library Parental gene expression (RPM)
SRP017611_brain 3 .74 RPM
SRP017611_kidney 0 .10 RPM
SRP017611_liver 0 .00 RPM
SRP040447_lung 0 .18 RPM
SRP040447_skeletal_muscle 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000967 within_species_paralog 2 retrogenes
retro_cpor_193, retro_cpor_97,
Dipodomys ordii ENSDORG00000003640 ortholog_one2one 2 retrogenes
retro_dord_742, retro_dord_748,
Myotis lucifugus ENSMLUG00000003074 ortholog_one2one 1 retrogene
retro_mluc_574,
Nomascus leucogenys ENSNLEG00000002639 ortholog_one2one 1 retrogene
retro_nleu_2044,
Oryctolagus cuniculus ENSOCUG00000002696 ortholog_one2one 1 retrogene
retro_ocun_1257,
Rattus norvegicus ENSRNOG00000001245 ortholog_one2one 1 retrogene
retro_rnor_2656,
Sorex araneus ENSSARG00000007629 ortholog_one2one 1 retrogene
retro_sara_414,
Tursiops truncatus ENSTTRG00000015075 ortholog_one2one 1 retrogene
retro_ttru_1095,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_257 54.86 50.15
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Download FASTA sequences of all ENSCPOG00000003648 retrocopies