Parental gene:

NDFIP2, ENSCJAG00000021282

Aliases:None
Description:Nedd4 family interacting protein 2 [Source:HGNC Symbol;Acc:18537]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:34986744..35072317(-)


>ENSCJAG00000021282
ATGGGACGCCGGCGGAGCCACCGAGTCTGCGCGAGCTGTCCGAGCATGCTCAATAGCGCGCGCGGCGTCCCGGAGCTCCT
CCGGGGAACCGCGACCGACGCGGAGGTCTCGGCGGCCGCTGCCGAAGCCACAGGAAGTGAAGCGCTTCCGCCTGGAGACC
GAGGCGGCAGGAACAGAGGCGGAAGGGGTCCTGCGGCAACGACGTTGTCGGCGGGGGTGGCCGAGGGAGCTGAGCACCGA
GGAGACTCGCCCGCTCGGAAGCCGGATCCGGAGCCGGGCAGGATGGATCACCACCAGCCGGGGACTGGGCGCTACCAGGT
GCTTCTTAATGAAGAGGATAACTCAGAATCATTGGCCATAGAGCAGCCATCTACTTCAAATACAGCACCACAGATTGTGC
AGTCTGCCTCTTCAGCACCAGCACTTGAAACTGACTCTTCCCCTCCACCGTATAGTAGTATTACTGTGGAAGTACCTACA
ACTTCAGATACAGAAGTTTACAGTGAGTTTTATCCTGTGCCACCTCCCTATAGTGTTGCTACCTCTCTTCCTACATACGA
TGAAGCTGAGAAGGCTAAAGCTGCTGCAATGGCAGCTGCAGCAGCAGAAACATCTCAAAGAATTCAGGAGGAAGAGTGTC
CACCAAGAGATGACTTCAGTGATGCGGACCAGCTCAGAGTGGGGAATGATGGCATTTTCATGCTGGCATTTTTCATGGCA
TTTATTTTCAACTGGCTTGGATTTTGTTTATCCTTCTGTATCACCAATACCATAGCTGGACGGTATGGTGCTATCTGCGG
ATTTGGCCTTTCCTTGATCAAATGGATCCTTATCGTCAGGTTTTCTGATTATTTTACTGGATATTTCAATGGACAATATT
GGCTTTGGTGGATATTTCTTGTACTTGGCCTGCTCCTTTTCTTCAGAGGATTTGTTAATTATCTAAAAGTCAGAAACATG
TCTGAAAGTATGGCAGCTGCTCATAGGACAAGGTATTTCTTCTTATTATAG

Library Parental gene expression (RPM)
SRP051959_colon 23 .01 RPM
SRP051959_heart 17 .12 RPM
SRP051959_kidney 40 .05 RPM
SRP051959_liver 26 .86 RPM
SRP051959_lung 22 .30 RPM
SRP051959_lymph_node 19 .34 RPM
SRP051959_skeletal_muscle 26 .07 RPM
SRP051959_spleen 27 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018271 within_species_paralog 1 retrogene
retro_cjac_3175,
Cavia porcellus ENSCPOG00000014687 ortholog_one2one 1 retrogene
retro_cpor_753,
Loxodonta africana ENSLAFG00000000864 ortholog_one2one 1 retrogene
retro_lafr_841,
Monodelphis domestica ENSMODG00000001586 ortholog_one2one 2 retrogenes
retro_mdom_1600, retro_mdom_48,
Mustela putorius furo ENSMPUG00000003366 ortholog_one2one 1 retrogene
retro_mputfur_1079,
Tupaia belangeri ENSTBEG00000005780 ortholog_one2one 1 retrogene
retro_tbel_3231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2643 90.78 83.93
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2. retro_cjac_2644 91.13 83.93
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Download FASTA sequences of all ENSCJAG00000021282 retrocopies