Parental gene:

TRNAU1AP, ENSCJAG00000009717

Aliases:None
Description:tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:62741176..62771024(+)


>ENSCJAG00000009717
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAACCCTATATGGATGAGAACTTCATCTCCAGAGCTTTCGCCACCATGGG
GGAGACTGTAATGAGCGTCAAAATTATCCGAAACCGCCTCACCGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAG
ATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCAGACGT
GGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTATCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAG
GCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAACGGGCCCTGACGGAGTGCCAGGGAGCA
GTGGGACTGGGGTCTAAACCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCA
GATGTACAGTTACAGCTACAACCAGTATTACCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAG
GCAGCTATAGCTACAGTTACCCCCAGTATGGCTATACTCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCA
TTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGATGC
TCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCCATGATGTAG

Library Parental gene expression (RPM)
SRP051959_colon 5 .70 RPM
SRP051959_heart 4 .40 RPM
SRP051959_kidney 4 .13 RPM
SRP051959_liver 3 .90 RPM
SRP051959_lung 5 .11 RPM
SRP051959_lymph_node 5 .91 RPM
SRP051959_skeletal_muscle 5 .68 RPM
SRP051959_spleen 4 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011367 ortholog_one2one 1 retrogene
retro_amel_1782,
Equus caballus ENSECAG00000012980 ortholog_one2one 1 retrogene
retro_ecab_452,
Mustela putorius furo ENSMPUG00000015511 ortholog_one2one 2 retrogenes
retro_mputfur_1185, retro_mputfur_856,
Pelodiscus sinensis ENSPSIG00000006864 ortholog_one2one 1 retrogene
retro_psin_41,
Tupaia belangeri ENSTBEG00000008049 ortholog_one2one 1 retrogene
retro_tbel_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3928 92.06 65.85
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Download FASTA sequences of all ENSCJAG00000009717 retrocopies