Parental gene:

LAPTM4A, ENSCJAG00000007433

Aliases:None
Description:lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:88542318..88561517(+)


>ENSCJAG00000007433
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCAC
CGGGACCATCATCCTGGGGACCTGGTACATGGTGGTAAACCTATTGATGGCAATTTTGCTGACTGTGGAAGTGACTCATC
CAAACTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATCGGTAATTACTATTCATCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCTGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTTTATGGAGCAATTTCTTATCAAGTGGG
CTGGCTGATTCCATTCTTCTGTTACCGGCTTTTTGACTTCGTCCTCAGTTGCCTGGTTGCTATTAGTTCTCTCACCTATT
TGCCGAGAATCAAAGAATATCTGGATCAGTTGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGC
CTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGGCTTATCTAATCAACTGTGTTTGGAACTGCTA
TAAATACATCAACAACCGAAACGTGCCAGAGATTGCTGTGTATCCTGCCTTTGAAGCGCCTCCTCAGTATGTTTTGCCAA
CTTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGA

Library Parental gene expression (RPM)
SRP051959_colon 53 .43 RPM
SRP051959_heart 59 .60 RPM
SRP051959_kidney 59 .73 RPM
SRP051959_liver 61 .99 RPM
SRP051959_lung 65 .13 RPM
SRP051959_lymph_node 50 .27 RPM
SRP051959_skeletal_muscle 40 .44 RPM
SRP051959_spleen 95 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020894 ortholog_one2one 1 retrogene
retro_btau_575,
Choloepus hoffmanni ENSCHOG00000011200 ortholog_one2one 2 retrogenes
retro_chof_1916, retro_chof_2320,
Callithrix jacchus ENSCJAG00000031235 within_species_paralog 3 retrogenes
retro_cjac_1368, retro_cjac_1664, retro_cjac_3027,
Echinops telfairi ENSETEG00000002569 ortholog_one2one 1 retrogene
retro_etel_591,
Mustela putorius furo ENSMPUG00000013714 ortholog_one2one 1 retrogene
retro_mputfur_657,
Ochotona princeps ENSOPRG00000012401 ortholog_one2one 2 retrogenes
retro_opri_356, retro_opri_474,
Pteropus vampyrus ENSPVAG00000002909 ortholog_one2one 3 retrogenes
retro_pvam_779, retro_pvam_847, retro_pvam_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_839 98.28 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000007433 retrocopies