Parental gene:

TRA2A, ENSCJAG00000001509

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:32232211..32250136(+)


>ENSCJAG00000001509
TCAGGAGCAATCAATATAAATAATTACGGTACTTTAAATGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGC
TCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAA
GATCAAAATCCAGAGATAGGATAAAAGTTCATTCTCATAGACGTTATACTCGATCCAGATCCCACTCTCACTCTCATAGG
AGACGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGCGAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAG
AAGACATACTGGCAGCAGGGCAAACCCAGATCCCAACACTTGCCTTGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGA
GAGATCTTCGTGAAGTATTTTCTCGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGATCAGCGAACGGGGCGATCT
CGAGGATTTGCTTTTGTATATTTTGAGCGAATAGATGACTCAAAGGAGGCTATGGAAAGAGCAAATGGAATGGAGCTGGA
TGGTAGAAGAATTCGAGTGGATTATTCTATCACCAAGAGAGCGCACACACCTACACCAGGCATCTACATGGGCAGACCAA
CCCAAAGAGAAAATTTTTTTCCCGTATTTAAAATTGATTTTGGCAAGGTGGGTGGGAGACGTCGAGATTCTTACTATGAT
AGAGGTTATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGGTACAGAAGACGATCACCTTCTCCTTATTATAG
TCGATACAGATCACGATCACGATCTCGTTCCTACAGCCCAAGACGCTACTGA

Library Parental gene expression (RPM)
SRP051959_colon 14 .47 RPM
SRP051959_heart 16 .26 RPM
SRP051959_kidney 18 .21 RPM
SRP051959_liver 13 .19 RPM
SRP051959_lung 24 .87 RPM
SRP051959_lymph_node 29 .86 RPM
SRP051959_skeletal_muscle 15 .02 RPM
SRP051959_spleen 27 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001130 ortholog_one2one 1 retrogene
retro_chof_974,
Echinops telfairi ENSETEG00000007250 ortholog_one2one 2 retrogenes
retro_etel_323, retro_etel_692,
Homo sapiens ENSG00000164548 ortholog_one2one 1 retrogene
retro_hsap_386,
Gorilla gorilla ENSGGOG00000009053 ortholog_one2one 1 retrogene
retro_ggor_391,
Mustela putorius furo ENSMPUG00000013480 ortholog_one2one 1 retrogene
retro_mputfur_1442,
Nomascus leucogenys ENSNLEG00000014794 ortholog_one2one 1 retrogene
retro_nleu_1481,
Otolemur garnettii ENSOGAG00000009733 ortholog_one2one 3 retrogenes
retro_ogar_1966, retro_ogar_2558, retro_ogar_3027,
Pongo abelii ENSPPYG00000017728 ortholog_one2one 1 retrogene
retro_pabe_324,
Pan troglodytes ENSPTRG00000018988 ortholog_one2one 1 retrogene
retro_ptro_299,
Sorex araneus ENSSARG00000012900 ortholog_one2one 1 retrogene
retro_sara_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1759 88.19 95.41
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Download FASTA sequences of all ENSCJAG00000001509 retrocopies