Parental gene:

PPP4C, ENSCAFG00000017089

Aliases:None
Description:Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:E2QU52]
Organism:Dog (Canis familiaris)
Coordinates:6:18085405..18092916(+)


>ENSCAFG00000017089
ATGGCGGAGATCAGCGACCTGGACCGGCAGATCGAGCAACTGCGGCGCTGCGAGCTCATCAAAGAGAGCGAAGTCAAGGC
CCTGTGCGCTAAGGCCAGAGAGATCTTGGTAGAGGAGAGCAACGTACAGAGGGTGGACTCGCCAGTCACAGTATGCGGTG
ACATCCACGGACAATTCTATGACCTCAAGGAGCTGTTCAGAGTGGGTGGCGACGTCCCAGAGACCAACTACCTCTTCATG
GGAGACTTTGTGGATCGTGGTTTCTACAGCGTCGAAACGTTCCTCCTGCTGCTGGCACTGAAGGTTCGCTATCCTGACCG
CATCACCCTGATCCGGGGCAACCACGAGAGCCGCCAGATCACCCAGGTCTATGGCTTCTATGACGAGTGTCTGCGTAAAT
ACGGCTCGGTGACTGTGTGGCGCTACTGCACAGAGATCTTTGACTACCTCAGCCTGTCGGCCATCATCGATGGCAAGATC
TTTTGTGTGCACGGGGGTCTCTCCCCCTCCATCCAGACCCTGGACCAGATCCGGACCATTGACCGAAAGCAAGAGGTGCC
CCATGACGGGCCCATGTGTGACCTGCTCTGGTCTGACCCTGAAGACACAACAGGCTGGGGTGTGAGCCCCCGCGGGGCTG
GCTACCTGTTTGGCAGTGACGTGGTGGCCCAGTTCAATGCAGCCAACGACATTGACATGATCTGCCGCGCCCATCAACTG
GTGATGGAAGGTTACAAGTGGCACTTCAATGAGACTGTGCTCACTGTGTGGTCTGCACCCAACTATTGCTACCGCTGTGG
GAATGTGGCAGCCATCTTGGAGCTGGATGAGCATCTCCAGAAAGATTTCATCATCTTCGAGGCTGCTCCCCAAGAGACCC
GGGGCATCCCCTCCAAGAAGCCCGTGGCCGATTATTTCCTGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 43 .80 RPM
SRP017611_brain 18 .18 RPM
SRP017611_kidney 64 .98 RPM
SRP017611_liver 20 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015223 ortholog_one2one 1 retrogene
retro_amel_286,
Ciona savignyi ENSCSAVG00000004266 ortholog_one2one 1 retrogene
retro_csav_27,
Equus caballus ENSECAG00000022179 ortholog_one2one 1 retrogene
retro_ecab_911,
Felis catus ENSFCAG00000014171 ortholog_one2one 1 retrogene
retro_fcat_1043,
Macropus eugenii ENSMEUG00000000397 ortholog_one2one 5 retrogenes
retro_meug_1014, retro_meug_1188, retro_meug_1336, retro_meug_560, retro_meug_859,
Ornithorhynchus anatinus ENSOANG00000008136 ortholog_one2one 1 retrogene
retro_oana_25,
Pan troglodytes ENSPTRG00000007984 ortholog_one2one 1 retrogene
retro_ptro_28,
Tursiops truncatus ENSTTRG00000005532 ortholog_one2one 1 retrogene
retro_ttru_1015,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_16 60.93 98.37
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Download FASTA sequences of all ENSCAFG00000017089 retrocopies