Parental gene:

RPL19, ENSCAFG00000016493

Aliases:None
Description:60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:D0VWQ5]
Organism:Dog (Canis familiaris)
Coordinates:9:23171601..23175949(-)


>ENSCAFG00000016493
ATGCTCAGGCTTCAGAAGAGGCTTGCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAGGTCTGGTTGGACCCCAATGAGAC
CAATGAAATCGCCAATGCAAACTCCCGTCAGCAGATACGAAAACTGATCAAAGATGGGCTGATAATCCGGAAGCCTGTGA
CTGTCCATTCCCGAGCTCGGTGCCGGAAAAACACTCTGGCCCGCCGGAAGGGCAGGCATATGGGCATTGGTAAGAGAAAA
GGTACTGCCAATGCTCGAATGCCTGAGAAGGTAACGTGGATGAGGAGGATGAGAATTCTACGCAGGCTGCTCAGAAGATA
CCGTGAATCTAAGAAGATTGACCGCCACATGTATCATAGCCTGTACCTGAAAGTGAAGGGTAATGTGTTCAAGAACAAGC
GGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCTGAGGCCCGC
AGATCTAAGACCAAGGAGGCCCGCAAGCGCCGTGAAGAACGGCTCCAGGCCAAGAAGGAGGAAATCATCAAGACTCTGTC
CAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 477 .69 RPM
SRP017611_brain 112 .50 RPM
SRP017611_kidney 996 .24 RPM
SRP017611_liver 226 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006023 ortholog_one2one 7 retrogenes
retro_chof_1041, retro_chof_1065, retro_chof_1135, retro_chof_1930, retro_chof_2567, retro_chof_338, retro_chof_993,
Callithrix jacchus ENSCJAG00000008520 ortholog_one2many 4 retrogenes
retro_cjac_131, retro_cjac_220, retro_cjac_32, retro_cjac_64,
Dasypus novemcinctus ENSDNOG00000019742 possible_ortholog 7 retrogenes
retro_dnov_1478, retro_dnov_1897, retro_dnov_2, retro_dnov_2170, retro_dnov_2431, retro_dnov_691, retro_dnov_720,
Equus caballus ENSECAG00000025080 possible_ortholog 6 retrogenes
retro_ecab_104, retro_ecab_319, retro_ecab_351, retro_ecab_456, retro_ecab_497, retro_ecab_905,
Macropus eugenii ENSMEUG00000013900 ortholog_one2one 10 retrogenes
retro_meug_1047, retro_meug_1201, retro_meug_1226, retro_meug_1256, retro_meug_1262, retro_meug_1486, retro_meug_1878, retro_meug_2108, retro_meug_2155, retro_meug_82,
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
retro_mmul_283, retro_mmul_63,
Mustela putorius furo ENSMPUG00000015041 ortholog_one2one 5 retrogenes
retro_mputfur_1221, retro_mputfur_1248, retro_mputfur_1479, retro_mputfur_357, retro_mputfur_688,
Nomascus leucogenys ENSNLEG00000000748 possible_ortholog 19 retrogenes
retro_nleu_1182, retro_nleu_1570, retro_nleu_1602, retro_nleu_1620, retro_nleu_1889, retro_nleu_2171, retro_nleu_2236, retro_nleu_2284, retro_nleu_2335, retro_nleu_2430, retro_nleu_2446, retro_nleu_2538, retro_nleu_2695, retro_nleu_2702, retro_nleu_2735, retro_nleu_3116, retro_nleu_479, retro_nleu_540, retro_nleu_656,
Pongo abelii ENSPPYG00000008492 ortholog_one2one 20 retrogenes
retro_pabe_1546, retro_pabe_1687, retro_pabe_1709, retro_pabe_1815, retro_pabe_2177, retro_pabe_2300, retro_pabe_2320, retro_pabe_2496, retro_pabe_2625, retro_pabe_2799, retro_pabe_2800, retro_pabe_3166, retro_pabe_3278, retro_pabe_3299, retro_pabe_3513, retro_pabe_3635, retro_pabe_3829, retro_pabe_4, retro_pabe_973, retro_pabe_980,
Rattus norvegicus ENSRNOG00000004741 possible_ortholog 37 retrogenes
retro_rnor_1029, retro_rnor_1039, retro_rnor_1295, retro_rnor_1338, retro_rnor_1405, retro_rnor_1440, retro_rnor_1449, retro_rnor_1478, retro_rnor_1512, retro_rnor_1525, retro_rnor_1558, retro_rnor_1577, retro_rnor_1765, retro_rnor_1766, retro_rnor_1795, retro_rnor_1814, retro_rnor_1860, retro_rnor_1885, retro_rnor_1905, retro_rnor_1907, retro_rnor_1970, retro_rnor_1981, retro_rnor_208, retro_rnor_2169, retro_rnor_2522, retro_rnor_2536, retro_rnor_2708, retro_rnor_2773, retro_rnor_2783, retro_rnor_2921, retro_rnor_2943, retro_rnor_326, retro_rnor_426, retro_rnor_434, retro_rnor_464, retro_rnor_465, retro_rnor_829,
Tursiops truncatus ENSTTRG00000006687 ortholog_one2one 4 retrogenes
retro_ttru_1131, retro_ttru_1132, retro_ttru_1389, retro_ttru_1804,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_328 93.33 100.00
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2. retro_cfam_357 67.53 98.45
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3. retro_cfam_486 71.64 68.56
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4. retro_cfam_851 91.75 100.00
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5. retro_cfam_909 94.36 100.00
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6. retro_cfam_932 87.10 63.92
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7. retro_cfam_940 68.99 65.46
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8. retro_cfam_1011 95.90 99.48
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9. retro_cfam_1647 70.68 68.04
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10. retro_cfam_1767 65.98 99.48
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11. retro_cfam_1799 73.73 60.31
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12. retro_cfam_1892 90.10 98.97
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13. retro_cfam_2082 88.66 100.00
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14. retro_cfam_2129 96.41 100.00
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Download FASTA sequences of all ENSCAFG00000016493 retrocopies