Parental gene:

SMARCD2, ENSCAFG00000012708

Aliases:None
Description:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:11107]
Organism:Dog (Canis familiaris)
Coordinates:9:11788556..11797732(-)


>ENSCAFG00000012708
ATGTCGGGCCGTGGCGCGGGCGGGTTCCCGCTGCCTCCGCTGAGTCCTGGTGGCGGCGCCGTTGCCGCGGCCCTGGGAGC
GCCGCCTCCGCCCGCGGGACCCGGCATGCTGCCGGGACCGGCGCTCAGGGGGCCAGGGCCGGCTGGCGGCGTGGGGGGCC
CCGGGGCCGCCGCCTTCCGCCCCATGGGCCCCGCGGGCCCCGCGGCGCAGTACCAGCGGCCTGGTATGTCACCGGGGAGC
CGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCCGCCGGCTCCCCATTTGGCACAGCTGCTCCACTTCGACCTGGCAT
GCCACCCACCATGATGGACCCATTCCGAAAACGCCTGCTGGTGCCCCAGGCCCAGCCCCCAATGCCCGCCCAGCGCCGGG
GGCTAAAGAGGAGGAAGATGGCAGATAAGGTTCTACCTCAGCGAATTCGGGAGCTTGTCCCAGAGTCTCAGGCGTACATG
GATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTGCCCGAAAGCGGATGGAGATCCAAGAGGCCATCAAAAAGCC
TCTGACGCAAAAACGAAAGCTGCGCATCTATATTTCCAATACGTTCAGCCCCAGCAAGGCAGAAGGCGATAATGCGGGCA
CCGCGGGGCCCCCTGGGGGAACCCCTGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAGTGGAGGGAAAACTGCTGGAT
GATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTAAGAGTCTCGTCATTGAGCTGGACAAAGAGTTATATGGGCC
TGACAACCACCTGGTGGAGTGGCACCGGATGCCCACCACCCAGGAGACTGATGGCTTCCAGGTCAAACGGCCTGGAGACC
TCAACGTCAAGTGCACCCTCCTGCTCATGCTAGATCATCAGCCTCCCCAGTACAAGTTGGACCCCCGACTGGCAAGGCTG
CTGGGGGTGCACACACAGACAAGGGCGGCCATCATGCAGGCTCTTTGGCTTTATATCAAACACAACCAACTGCAGGATGG
GCACGAGCGCGAGTACATCAATTGCAACCGTTACTTCCGCCAGATCTTCAGTTGTGGCCGACTTCGTTTCTCTGAGATTC
CCATGAAGCTGGCTGGGTTGCTGCAGCATCCAGACCCCATTGTCATCAACCATGTCATTAGCGTAGACCCTAACGACCAG
AAGAAGACAGCATGTTACGACATTGATGTGGAGGTAGACGACCCACTCAAGGCCCAGATGAGCAATTTTCTGGCCTCTAC
CACCAATCAGCAGGAGATTGCCTCCCTCGATGTCAAGATCCATGAGACCATTGAGTCCATCAACCAGCTGAAGACCCAGA
GGGATTTCATGCTCAGCTTTAGCACGGACCCTCAGGACTTCATCCAGGAATGGCTCCGTTCTCAGCGCCGAGACCTCAAG
ATCATCACTGATGTGATTGGGAATCCTGAGGAGGAGAGACGAGCTGCTTTCTACCACCAGCCCTGGGCCCAGGAAGCAGT
TGGGAGGCACATCTTTGCCAAGGTGCAGCAGCGAAGGCAAGAACTGGAACAGGTGCTGGGAATCCGCTTGACCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 36 .20 RPM
SRP017611_brain 10 .48 RPM
SRP017611_kidney 33 .94 RPM
SRP017611_liver 60 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019528 ortholog_one2one 1 retrogene
retro_cjac_2323,
Mustela putorius furo ENSMPUG00000014835 ortholog_one2many 1 retrogene
retro_mputfur_89,
Sarcophilus harrisii ENSSHAG00000013118 ortholog_one2one 1 retrogene
retro_shar_464,
Tursiops truncatus ENSTTRG00000006988 ortholog_one2one 1 retrogene
retro_ttru_1394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_256 97.13 65.73
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Download FASTA sequences of all ENSCAFG00000012708 retrocopies