Parental gene:

GTF2F2, ENSBTAG00000034495

Aliases:None
Description:General transcription factor IIF subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q2T9L9]
Organism:Cow (Bos taurus)
Coordinates:12:15329214..15465651(+)


>ENSBTAG00000034495
ATGGCCGAGCGCGGAGAACTCGACCTGACTGGCGCCAAACAGAACACCGGAGTGTGGCTGGTCAAGGTTCCTAAATATTT
GTCGCAGCAATGGGCTAAAGCCCCTGGAAGAGGTGAAGTTGGGAAGCTGAGGATTGCCAAAAATCAAGGAAGGACCGAGG
TTTCATTTACTTTGAATGAGGATCTTGCAAATATTCATGATATTGGTGGAAAACCGGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTACAAAGTGTCGGAGGACAGACATTAACCGTGTTCACTGAGAGTTCCTCAGATAAGCTTTCACTGGA
AGGAATAGTGGTACAAAGAGCTGAATGCCGACCTGCTGCCAATGAAAACTACATGAGGTTAAAGAGATTGCAAATAGAAG
AATCTTCCAAACCTGTAAGGCTATCACAGCAGCTGGACAAAGTCGTGACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAATATGAAAGGAAAAAGAAAGAAGATGGAAAGCGAGCCCGAGCTGATAAACAACACGTTTTGGATATGCT
GTTTTCAGCTTTTGAGAAGCATCAGTATTATAATCTGAAGGACTTGGTGGACATCACAAAACAACCTGTGTCCTACCTGA
AGGACATCTTAAAGGAAATTGGTGTTCAAAATGTAAAAGGGATCCACAAAAACACATGGGAACTGAAGCCAGAATACAGA
CATTATCAAGTAGAAGAAAAAAGTGATTAA

Library Parental gene expression (RPM)
ERP005899_liver 6 .27 RPM
ERP005899_muscle 8 .50 RPM
SRP017611_brain 6 .21 RPM
SRP017611_kidney 7 .88 RPM
SRP017611_liver 4 .83 RPM
SRP030211_testis 22 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028333 ortholog_one2many 1 retrogene
retro_acar_174,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2one 1 retrogene
retro_chof_1718,
Felis catus ENSFCAG00000002105 ortholog_one2one 1 retrogene
retro_fcat_526,
Myotis lucifugus ENSMLUG00000010505 ortholog_one2many 1 retrogene
retro_mluc_58,
Monodelphis domestica ENSMODG00000025484 ortholog_many2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 ortholog_one2many 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 ortholog_one2many 1 retrogene
retro_nleu_742,
Procavia capensis ENSPCAG00000005868 ortholog_one2one 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pongo abelii ENSPPYG00000005333 possible_ortholog 1 retrogene
retro_pabe_93,
Pteropus vampyrus ENSPVAG00000014092 ortholog_one2one 1 retrogene
retro_pvam_1490,
Rattus norvegicus ENSRNOG00000029316 ortholog_one2one 1 retrogene
retro_rnor_1288,
Ictidomys tridecemlineatus ENSSTOG00000006891 possible_ortholog 1 retrogene
retro_itri_19,
Tursiops truncatus ENSTTRG00000002729 ortholog_one2one 2 retrogenes
retro_ttru_1003, retro_ttru_850,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_208 67.90 97.59
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2. retro_btau_1753 78.09 100.00
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Download FASTA sequences of all ENSBTAG00000034495 retrocopies