Parental gene:

BT.29416, ENSBTAG00000022920

Aliases:None
Description:E3 ubiquitin-protein ligase RNF128 precursor [Source:RefSeq peptide;Acc:NP_001069539]
Organism:Cow (Bos taurus)
Coordinates:X:56840832..56905852(-)


>ENSBTAG00000022920
ATGGGGCAGCTGCCAGGGGCCGGGGTCTTCTGCCGCGGTGGTTGTGGCTTTTCCCGATTGCTGGCCTGGTGCTTCCTGCT
GGTTCTGAGTCCGCAAACCCCCGGCTCCAGGGGAGCCGAAGCCGTGTGGACCGCGTACCTCAACGTGTCCTGGCGGGTTC
CGCACACCGGAGTGAACCGCACCGTGTGGGAGCTGAGCGAGGAGGGCGTGTACGGCCAGGATTCGCCGCTCGAGCCCGTG
GCTGGGGTCCTGGTACCGCCCGACGGGCCGGGGGCGCTCAATGCCTGTAACCCGCACACGAATTTCACGGTGCCCACGGT
CCCGGGGGACTGGGGCAGCAGCGTGCAAGTGTCTTGGTTGGCCCTCATCCAGCGCGGTGGGGGTTGCACCTTCGCAGACA
AGATCCATCTGGCTTACGAGAGAGGGGCGTCTGGAGCCGTCATCTTTAACTTCCCGGGGACCCGCAATGAGGTCATCCCC
ATGTCTCACCCGGGTGCAGGAGACATTGTTGCAATCATGATTGGCAATCTGAAAGGCACCAAAATTCTACAATCTATTCA
AAGAGGCATACAAGTAACAATGGTCATTGAAGTAGGGAAAAAACATGGTCCTTGGGTGAATCACTATTCGATTTTTTTTG
TTTCTGTGTCCTTTTTCATTATTACGGCGGCAACTGTGGGCTATTTTATCTTTTATTCTGCTCGAAGATTACGGAATGCA
AGAGCTCAAAGCAGAAAGCAGAGACAGTTAAAGGCAGATGCTAAAAAAGCTATTGGAAGGCTTCAACTCCGTACACTGAA
GCAAGGAGACAAGGAAATCGGCCCTGATGGAGATAGTTGTGCCGTGTGTATTGAACTATATAAACCAAATGATTTGGTGC
GCATCCTAACCTGCAACCATGTTTTCCATAAGACATGTGTTGACCCATGGCTGTTAGAACACAGGACTTGCCCCATGTGC
AAATGTGACATACTCAAAGCTTTGGGAATTGAGGTGGATGTTGAAGATGGGTCAGTGTCTTTACAAGTTCCTGTATCCAA
TGAAACTTCCAGTAATGCCTCTCCTCATGAAGAGGATAACCGCAGTGAGACTGCTTCATCTGGATATGCTTCAGTTCAGG
GAGCAGATGAACCACCTTTGGAGGAACATGCACACTCAGCAAATGAAAATCTACAGCTGGTAAACCATGAAGCAAATTCC
ATGGCAGTGGATGTTGTTCCTCACGTTGACAACCCAACCTTTGAAGAAGATGAAAGTCCTGATCAGGAGACCACTGTTCG
AGAAATTAAATCATAA

Library Parental gene expression (RPM)
ERP005899_liver 692 .77 RPM
ERP005899_muscle 139 .26 RPM
SRP017611_brain 17 .91 RPM
SRP017611_kidney 133 .84 RPM
SRP017611_liver 190 .73 RPM
SRP030211_testis 10 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004913 other_paralog 1 retrogene
retro_btau_217,
Loxodonta africana ENSLAFG00000002816 ortholog_one2one 1 retrogene
retro_lafr_946,
Macropus eugenii ENSMEUG00000001567 ortholog_one2one 1 retrogene
retro_meug_1139,
Mustela putorius furo ENSMPUG00000003695 ortholog_one2one 1 retrogene
retro_mputfur_340,
Oryctolagus cuniculus ENSOCUG00000012328 ortholog_one2one 1 retrogene
retro_ocun_37,
Pan troglodytes ENSPTRG00000022151 ortholog_one2one 1 retrogene
retro_ptro_2651,
Sus scrofa ENSSSCG00000012551 ortholog_one2one 1 retrogene
retro_sscr_597,
Ictidomys tridecemlineatus ENSSTOG00000022922 ortholog_one2one 2 retrogenes
retro_itri_1254, retro_itri_1255,
Tursiops truncatus ENSTTRG00000007536 ortholog_one2one 1 retrogene
retro_ttru_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1358 59.36 58.24
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Download FASTA sequences of all ENSBTAG00000022920 retrocopies