Parental gene:

ENSACAG00000023302

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:AAWZ02036000:3898..26479(-)


>ENSACAG00000023302
TATAAATGTATCGAATGTGGAAAGAGCTTTAGTCAGCATGGAAAGCTGAAGAGACATCAAAGGACTCACACTGGGGAGAA
ACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTGATAGTTCAACTCTACGTAAACATCAAAGGACTCACACTGGGG
AGAAACCCTATAAATGCCTGGAGTGTGGACAGAACTTCTCTCATAATTCACAATTACATAGACATCAAAGGACTCACACT
GGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTCGTAGTTCAGTTCTACGTTCACATCAAAGGACTCA
CACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACACAGCTTTGCTGATAGTTCAACTCTACGTAAACATCAAAGGA
CTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTCACTCAGAAGGGACACTTACATACACATCAA
AGAACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTTGCTCATAGTTCAGGACTACGTAACCA
TCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTGATAGTACAGGACTACGTT
CACATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTCACTCAGAAGGGACACTTT
CATACACATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCATGGAGTGTGGACAGAGCTTCACTCAGAAGGGACA
CTTACATACACATCAAAGAACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTCACTCAGAATT
CAGGACTACGTACACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCAG
AAGGGAAACTTACATAAACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGCGGACATAGCTTCGC
TCGTAGTTCACATCTACGTTCACATCATGAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGA
GCTTCACTCAGACTTCAGGCCTACATAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGA
CAGAGCTTCACTCATAGTTCAGGCCTACGTTCCCATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTG
TGGACAGACCTTCACCCATAGTTCAGGCCTACGTTCACATCAAAGAACTCACACTGGGGATAAATCCTATACATGCCTGG
AGTGTGGACAGAGCTACACTCGTAGTTCAAGCCTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTATACATGC
CTGGAGTGTGGACAGAGCTTCACTCGTAGCTCAGGCCTACGTAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAA
CTGCCTGGAGTGTGGACAGAGCTTTACTCAGAAGGGGCACTTACATTCACATCAAAGGACTCACACTGGGGAGAAACCCT
TTAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGCTCAGGCCTACGTAGACATCAAAGGACTCACACTGGGGAGAAA
CCCTATAACTGCCTGGAGTGTGGACAAGGCTTTGCTGATAGTCCAGGCCTACATTCACATCAAAGGACTCACACTGGGGA
GAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAGTTTTACGTTCACATCAAAGGACTCACACTG
GGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAAATCTACGTTCACATCATAGGATTCAC
ACTGGGGAGAAACCCTTTAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGCTCAGGCCTACGTAGACATCAAATGAC
TCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAAGGCTTTGCTGATAGTCCAGGCCTACATTCACATCAAA
GGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAGTTTTACGTTCACAT
CAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAAATCTACGTTC
ACATCATAGGATTCACACTGGGGAGAAACCCTTTAAATGCCTGGAGTGTGGACAGAGC

Library Parental gene expression (RPM)
SRP009831_adrenal 0 .53 RPM
SRP009831_brain 0 .47 RPM
SRP009831_dewlap 0 .76 RPM
SRP009831_embryo 0 .65 RPM
SRP009831_heart 0 .57 RPM
SRP009831_liver 0 .04 RPM
SRP009831_lung 0 .05 RPM
SRP009831_ovary 1 .00 RPM
SRP009831_skeletal_muscle 0 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008838 within_species_paralog 1 retrogene
retro_acar_51,
Anolis carolinensis ENSACAG00000026389 within_species_paralog 2 retrogenes
retro_acar_13, retro_acar_4,
Anolis carolinensis ENSACAG00000026721 within_species_paralog 1 retrogene
retro_acar_23,
Anolis carolinensis ENSACAG00000026996 within_species_paralog 1 retrogene
retro_acar_22,
Anolis carolinensis ENSACAG00000027062 within_species_paralog 1 retrogene
retro_acar_29,
Ciona savignyi ENSCSAVG00000007589 ortholog_many2many 2 retrogenes
retro_csav_30, retro_csav_31,
Equus caballus ENSECAG00000010608 possible_ortholog 1 retrogene
retro_ecab_68,
Equus caballus ENSECAG00000021667 possible_ortholog 1 retrogene
retro_ecab_560,
Macaca mulatta ENSMMUG00000013571 possible_ortholog 1 retrogene
retro_mmul_248,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_3 84.15 79.90
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2. retro_acar_34 72.58 65.80
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Download FASTA sequences of all ENSACAG00000023302 retrocopies