RetrogeneDB ID:

retro_vvin_21

Retrocopy
location
Organism:Grape (Vitis vinifera)
Coordinates:18:12205115..12205631(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:VIT_18s0001g14160
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:VIT_10s0003g00530
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_vvin_21
ATGGGCAAGGGAAAGGGAAAAGGAAAGTTGAAGGGCAAATCCGTTGGTATGCGTCAATTCTCCACCGATGAGGAGATTGT
GGCTAGTATCTTTATTCATTCTAGTACTTTCAATCAAGAAGAAATTGAAGGAAAAGAAGAATACTCTGGAGAAGAATTTG
AAGAAGAACCTCGTGAGGTAAGGCGAAAAGGTGTCCAAGGTTTGATTGAGGTTGAGAATCCTAATTGGGGGAAGCCAAAT
GTCTTGAAAGTTAAAGACATTGATGTTGAAAAAATAACTCAACTTTCCAAGCATGAAAAAAATGAAATAGATAAACAGAA
AAGATATGAACGAGGTATGAAATTACACGAGGAAGGGAAAACAGAACAAGCAAAGAAAGATTTAGAACGTTTAACTTTGA
TTCGGCAACAAAGAGTTGATACTGCTAAAAAGCGAGAAGAAGAAAAAGCTTTCAAAGAGAAAAAGAAGGAAGAAAAAGCT
TTCAAAGAGAAAAAGAAGGCCGAGGCTCGCAAATGA

ORF - retro_vvin_21 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.01 %
Parental protein coverage: 97.44 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGRGKFKGKPTGRRQFSTPEEMLAGTSSRPRTFKREEAEVEEEHSEEESEEEPEE-RRKGTQGLIEVENPN
G.GK.KGK..G.RQFST.EE..A.......TF..EE.E..EE.S.EE.EEEP.E.RRKG.QGLIEVENPN
RetrocopyGKGKLKGKSVGMRQFSTDEEIVASIFIHSSTFNQEEIEGKEEYSGEEFEEEPREVRRKGVQGLIEVENPN
ParentalLVKPKTLKARDIDIEKTTELSRREREEIEKQKAHERYMRLQEQGKTEQAKKDLERLALIRQQRADAAKKR
..KP..LK..DID.EK.T.LS..E..EI.KQK..ER.M.L.E.GKTEQAKKDLERL.LIRQQR.D.AKKR
RetrocopyWGKPNVLKVKDIDVEKITQLSKHEKNEIDKQKRYERGMKLHEEGKTEQAKKDLERLTLIRQQRVDTAKKR
ParentalEEEKAAKEQKKAE
EEEKA.KE.KK.E
RetrocopyEEEKAFKEKKKEE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_21 was not experimentally validated.

Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Vitis vinifera VIT_10s0003g00530 1 retrocopy
retro_vvin_21 ,



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