RetrogeneDB ID: retro_ttru_913

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_609:845381..846113(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRD5A3
• Ensembl ID: ENSTTRG00000000958
• Aliases: None
• Description: steroid 5 alpha-reductase 3 [Source:HGNC Symbol;Acc:25812]

Sequence

>retro_ttru_913
TATTTTTCTCACTTCTATATCATCTCAGTGCTGTGGAATGGCTTCCTGCTTTGGAGCCTTACTCAGTCTCTGTTTGTGGG
AGCACCTTTTCCAAACTGGCTTCATCATTTACTCAGAATTCTTGGGGCTGCGCAATTCCGAGGGGGTGAGCTCGCGCTGT
CTGCGTTCTTAGTACTAGTGTTTCTGTGGCTACACAGCCTACGAAGACTCTTCGAGTGCTTCTATGTCAGTGTCTTCTTC
AAGGCCATGATTCACGTCGTGCAGTACTGTTTTGGACTTGTCTACTATGTCCTTGTTGGCCTAACCGTGTTGAGCCAAGT
GCCAATGGACGGCAGGAATGTCTATGTGATAGGGAAAAATCTCTTGATGTAAGCTCGGCGGTTCCATATCCTCGGAATGA
TGATGTTCATCTGGTCGTCTGTCCATCAGTATAAGTGTCATGTCATTCTCGGCAATCTCAGGAAAAATAAAGCAGGAGTG
GTCATTCACTGTAACCACCGAATCCCTTTTGGAGACTGGTTTGAATACGTTTCTTCCCCTAACTACCTGGCAGAGCTGAT
GATCTACATTTCCATGGCTGTCGCCTTTGGTTTCCACAACTTAACTTGGTGGCTCGTGGTAACATATGTCTTCTTCAACC
AGGCCCTGTCTGCTTTCCTCAGCCACAAATTCTACAAAAGCAAATTCGTCTCCTACCCGAAGCACAGGAAAGCTTTCCTA
CCATTTCTGTTT

Alignment

ORF - retro_ttru_913 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.13 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YFSHFYIISVLWNGFLLWSLTQSLFVGAPFPNWLHHLLRILGAAQFRGGELVLSAFLVLVFLWLHSLRRL
          YFSHFYIISVLWNGFLLWSLTQSLFVGAPFPNWLHHLLRILGAAQFRGGEL.LSAFLVLVFLWLHSLRRL
Retrocopy YFSHFYIISVLWNGFLLWSLTQSLFVGAPFPNWLHHLLRILGAAQFRGGELALSAFLVLVFLWLHSLRRL

Parental  FECFYVSVFSNAMIHVVQYCFGLVYYVLVGLTVLSQVPMDGRNVYVIGKNLLMQARWFHILGMMMFIWSS
          FECFYVSVF..AMIHVVQYCFGLVYYVLVGLTVLSQVPMDGRNVYVIGKNLLM.AR.FHILGMMMFIWSS
Retrocopy FECFYVSVFFKAMIHVVQYCFGLVYYVLVGLTVLSQVPMDGRNVYVIGKNLLM*ARRFHILGMMMFIWSS

Parental  VHQYKCHVILGNLRKNKAGVVIHCNHRIPFGDWFEYVSSPNYLAELMIYISMAVTFGFHNLTWWLVVTYV
          VHQYKCHVILGNLRKNKAGVVIHCNHRIPFGDWFEYVSSPNYLAELMIYISMAV.FGFHNLTWWLVVTYV
Retrocopy VHQYKCHVILGNLRKNKAGVVIHCNHRIPFGDWFEYVSSPNYLAELMIYISMAVAFGFHNLTWWLVVTYV

Parental  FFSQALSAFLSHKFYKSKFVSYPKHRKAFLPFLF
          FF.QALSAFLSHKFYKSKFVSYPKHRKAFLPFLF
Retrocopy FFNQALSAFLSHKFYKSKFVSYPKHRKAFLPFLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_913 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_913 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004093	1 retrocopy	retro_chof_1211,
Microcebus murinus	ENSMICG00000000317	1 retrocopy	retro_mmur_1071,
Pan troglodytes	ENSPTRG00000016070	1 retrocopy	retro_ptro_798,
Tursiops truncatus	ENSTTRG00000000958	1 retrocopy	retro_ttru_913 ,