RetrogeneDB ID: retro_ttru_491

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2465:308986..309931(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCNG2
• Ensembl ID: ENSTTRG00000014837
• Aliases: None
• Description: cyclin G2 [Source:HGNC Symbol;Acc:1593]

Sequence

>retro_ttru_491
GTGAAGGATCTGGGGGCATAGGTCTTGGCAGGCTGGAATAAGTTCAACTCTCTGAGCTACTGAAACTCTTACTTGGAATA
GGAACAGAAATTCCCACCACAAAAAAGGACTGAGCTTGATGAAGGCTTCCCCTGAGAACAATAACATTGTGTGTTAAAGA
CAGAGACAGGTCAAGATTTAAGGGATTTAACCAACTTTTTTATTTTCAGTCTTGCACATAAACTTTTATCCTGGTTGTCA
ATATTTTGGACAGATCCTTGGCTTTTATGAAGGTGAAACCTAAAATTTGTCTTGCACTGGAGTCTGTTGTTTTTGCTGGC
TGCCAGAAGAGTTGAAGAAGAATGCAATGATTCATCTTCTCATGAAGTAGTCTGGATTAGTCAATGTAAATGCACTGCTT
CTGACAGAAAATGAAGGAAAAAAATAACTTTGGAAGAAAAATTAGAACTATGAAATGGAACATGCTGCTGTATTAAACTT
TTTTTTCTCACACAAGACTATTATACTTCTTCATATTTCAGAAAGGAAAGAAATATTGAGCCTTGATAAACTGGAAGCTC
AGCTGAAAGCTTGCAATTTTCTACTAGTCTTTGCAAAAGCAAAGCCATCCGTATTAACTTTGTGTCTTCTCAATCTGGAA
GTAGAAACGTAATTCATTAAGTTATCGCAGTTTCTCCAGCTTGTTATAAAGTATTCAAAGATTAATGATACTGAGTCCTT
TTACTGGAGGTAAGTAAGTAGTTTCTAAATGACTAGCTGGATATTTTCTCTTGAATGTTGCAAGAAGTTGGTTTGGATTG
TCTATAGGCAAGAGCCCAGACCCTCCAAGACAGCAACTTTGGTGTTCCTGAGTTGTCAACAATACCAGAAGATTGCTGTC
TTGATGAAAGTGAAAGTGAATCCCTTGTGGATGTGAGTTTTAGAGAATGAAGTCTCAGCAGTTCT

Alignment

ORF - retro_ttru_491 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.1 %
• Parental protein coverage: 93.31 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MKDLGAEYLAGREGVQLFGLLNLYLEQEQRFQPREKGLSLIEA-TPENDNTLCPRLRNAKVEDLRSLTNF
          .KDLGA..LAG..........N.YLE.EQ.F.P..K...L.E...P....TLC...R.............
Retrocopy VKDLGA*VLAGWNKFNSLSY*NSYLE*EQKFPP-QKRTELDEG<LPLRTITLCVKDRDRSRFKGFNQLFY

Parental  FGSCTETFVLAVNILDRFLALMKVKPK-HLSCIGVCCF-LLAARIVEEECNIPSTLDVIRISQCKCTASD
          F.SCT.TF.L.VNILDR.LA.MKVKPK..LSC.GVCCF.LLAAR.VEEECN..S...V..ISQCKCTASD
Retrocopy FQSCT*TFILVVNILDRSLAFMKVKPK<NLSCTGVCCF<LLAARRVEEECNDSSSHEVVWISQCKCTASD

Parental  IKRMEKI-ISEKL-HYELEATTALNFLHLYHTIVLCHTSERKEILSLDKLEAQLKACCCRLTFSKAKPSV
          .K...KI...EKL..YE.E....LN......TI.L.H.SERKEILSLDKLEAQLKAC...L.F.KAKPSV
Retrocopy RK*RKKITLEEKL>NYEMEHAAVLNXXXSHKTIILLHISERKEILSLDKLEAQLKACNFLLVFAKAKPSV

Parental  LALCLLNLEVETLKSIELLEILLLVKKHSKVNDSEFVYWRELVSKCLAEY-SSPECCKPDLKKLVWIVSR
          L.LCLLNLEVET...I.L...L.LV.K.SK.ND.E..YWR...S........S.ECCK....KLVWIV.R
Retrocopy LTLCLLNLEVET-*FIKLSQFLQLVIKYSKINDTESFYWR*VSSF*MTSWIFSLECCK----KLVWIVYR

Parental  R-TAQNLHNSYYSVPELPTIPEVGCFDESESEDSCEDMSCGEESLSSS
          ...AQ.L..S...VPEL.TIPE..C.DESESE.S..D.S..E.SLSSS
Retrocopy Q<RAQTLQDSNFGVPELSTIPEDCCLDESESE-SLVDVSFRE*SLSSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_491 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_491 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013793	1 retrocopy	retro_amel_960,
Dasypus novemcinctus	ENSDNOG00000005210	1 retrocopy	retro_dnov_2498,
Felis catus	ENSFCAG00000026008	1 retrocopy	retro_fcat_1062,
Macropus eugenii	ENSMEUG00000008707	1 retrocopy	retro_meug_1962,
Macaca mulatta	ENSMMUG00000000914	1 retrocopy	retro_mmul_879,
Monodelphis domestica	ENSMODG00000011779	1 retrocopy	retro_mdom_358,
Nomascus leucogenys	ENSNLEG00000008169	1 retrocopy	retro_nleu_933,
Pongo abelii	ENSPPYG00000014867	1 retrocopy	retro_pabe_942,
Pan troglodytes	ENSPTRG00000016196	1 retrocopy	retro_ptro_773,
Sus scrofa	ENSSSCG00000008988	1 retrocopy	retro_sscr_813,
Ictidomys tridecemlineatus	ENSSTOG00000027922	1 retrocopy	retro_itri_1112,
Tupaia belangeri	ENSTBEG00000007671	2 retrocopies	retro_tbel_2258, retro_tbel_38,
Tursiops truncatus	ENSTTRG00000014837	1 retrocopy	retro_ttru_491 ,